From b919ae067c9d603a5bafd59aaf16d4127c1fa9bb Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Wed, 4 Oct 2023 14:50:32 +0100
Subject: [PATCH 1/6] delete test

---
 e2e_tests/test_darwin.py | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)

diff --git a/e2e_tests/test_darwin.py b/e2e_tests/test_darwin.py
index c1727b417..1fb5b8e35 100644
--- a/e2e_tests/test_darwin.py
+++ b/e2e_tests/test_darwin.py
@@ -4,6 +4,7 @@
 import tempfile
 import uuid
 from pathlib import Path
+from threading import local
 from time import sleep
 from typing import Generator
 
@@ -152,5 +153,20 @@ def test_darwin_export(local_dataset_with_annotations: E2EDataset, config_values
     # if we check for release name
 
 
+def test_delete(local_dataset: E2EDataset) -> None:
+    """
+    Test deleting a dataset via the darwin cli, dataset created via fixture
+    """
+    assert local_dataset.id is not None
+    assert local_dataset.name is not None
+    result = run_cli_command(f"darwin dataset remove {local_dataset.name}", yes=True)
+    assert_cli(result, 0)
+    # Check that the dataset is gone, if so, remove from pytest object so it doesn't get deleted again
+    # and cause a failure on teardown
+    result = run_cli_command(f"darwin dataset files {local_dataset.name}")
+    assert_cli(result, 1, in_stdout="Error: No dataset with")
+    pytest.datasets.remove(local_dataset)  # type: ignore
+
+
 if __name__ == "__main__":
     pytest.main(["-vv", "-s", __file__])

From a264ec41669d3085baab70d551cd3e66f9cfa008 Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Thu, 5 Oct 2023 13:22:55 +0100
Subject: [PATCH 2/6] rerun tests on failure

---
 .github/workflows/e2e.yml |    2 +-
 poetry.lock               | 1719 +++++++++++++++++++------------------
 pyproject.toml            |    1 +
 3 files changed, 865 insertions(+), 857 deletions(-)

diff --git a/.github/workflows/e2e.yml b/.github/workflows/e2e.yml
index c5ada389a..b9c6a4c53 100644
--- a/.github/workflows/e2e.yml
+++ b/.github/workflows/e2e.yml
@@ -36,7 +36,7 @@ jobs:
           pip install --editable ".[test,ml,medical,dev,ocv]"
           pip install pytest
       - name: Run Tests
-        run: python -m pytest e2e_tests -W ignore::DeprecationWarning
+        run: python -m pytest e2e_tests --reruns 3 --reruns-delay 10 -W ignore::DeprecationWarning
         env:
           E2E_API_KEY: ${{ secrets.E2E_API_KEY }}
           E2E_ENVIRONMENT: ${{ secrets.E2E_ENVIRONMENT }}
diff --git a/poetry.lock b/poetry.lock
index 7e534aaa3..3d5cfc89d 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,5 +1,3 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
-
 [[package]]
 name = "argcomplete"
 version = "2.1.2"
@@ -7,10 +5,6 @@ description = "Bash tab completion for argparse"
 category = "main"
 optional = false
 python-versions = ">=3.6"
-files = [
-    {file = "argcomplete-2.1.2-py3-none-any.whl", hash = "sha256:4ba9cdaa28c361d251edce884cd50b4b1215d65cdc881bd204426cdde9f52731"},
-    {file = "argcomplete-2.1.2.tar.gz", hash = "sha256:fc82ef070c607b1559b5c720529d63b54d9dcf2dcfc2632b10e6372314a34457"},
-]
 
 [package.dependencies]
 importlib-metadata = {version = ">=0.23,<6", markers = "python_version == \"3.7\""}
@@ -26,10 +20,6 @@ description = "Classes Without Boilerplate"
 category = "main"
 optional = false
 python-versions = ">=3.7"
-files = [
-    {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"},
-    {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
-]
 
 [package.dependencies]
 importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
@@ -48,20 +38,6 @@ description = "The uncompromising code formatter."
 category = "main"
 optional = true
 python-versions = ">=3.7"
-files = [
-    {file = "black-22.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9eedd20838bd5d75b80c9f5487dbcb06836a43833a37846cf1d8c1cc01cef59d"},
-    {file = "black-22.12.0-cp310-cp310-win_amd64.whl", hash = "sha256:159a46a4947f73387b4d83e87ea006dbb2337eab6c879620a3ba52699b1f4351"},
-    {file = "black-22.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d30b212bffeb1e252b31dd269dfae69dd17e06d92b87ad26e23890f3efea366f"},
-    {file = "black-22.12.0-cp311-cp311-win_amd64.whl", hash = "sha256:7412e75863aa5c5411886804678b7d083c7c28421210180d67dfd8cf1221e1f4"},
-    {file = "black-22.12.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:c116eed0efb9ff870ded8b62fe9f28dd61ef6e9ddd28d83d7d264a38417dcee2"},
-    {file = "black-22.12.0-cp37-cp37m-win_amd64.whl", hash = "sha256:1f58cbe16dfe8c12b7434e50ff889fa479072096d79f0a7f25e4ab8e94cd8350"},
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-    {file = "black-22.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:559c7a1ba9a006226f09e4916060982fd27334ae1998e7a38b3f33a37f7a2148"},
-    {file = "black-22.12.0-py3-none-any.whl", hash = "sha256:436cc9167dd28040ad90d3b404aec22cedf24a6e4d7de221bec2730ec0c97bcf"},
-    {file = "black-22.12.0.tar.gz", hash = "sha256:229351e5a18ca30f447bf724d007f890f97e13af070bb6ad4c0a441cd7596a2f"},
-]
 
 [package.dependencies]
 click = ">=8.0.0"
@@ -85,10 +61,6 @@ description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
 python-versions = ">=3.6"
-files = [
-    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
-    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
-]
 
 [[package]]
 name = "charset-normalizer"
@@ -97,83 +69,6 @@ description = "The Real First Universal Charset Detector. Open, modern and activ
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
-files = [
-    {file = "charset-normalizer-3.2.0.tar.gz", hash = "sha256:3bb3d25a8e6c0aedd251753a79ae98a093c7e7b471faa3aa9a93a81431987ace"},
-    {file = "charset_normalizer-3.2.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:0b87549028f680ca955556e3bd57013ab47474c3124dc069faa0b6545b6c9710"},
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 [package.dependencies]
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 [package.dependencies]
 numpy = "*"
@@ -258,26 +108,6 @@ description = "An implementation of the Debug Adapter Protocol for Python"
 category = "main"
 optional = true
 python-versions = ">=3.7"
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 [[package]]
 name = "deprecation"
@@ -286,10 +116,6 @@ description = "A library to handle automated deprecations"
 category = "main"
 optional = false
 python-versions = "*"
-files = [
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 [package.dependencies]
 packaging = "*"
@@ -299,12 +125,8 @@ name = "exceptiongroup"
 version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
 category = "main"
-optional = true
+optional = false
 python-versions = ">=3.7"
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 [package.extras]
 test = ["pytest (>=6)"]
@@ -316,10 +138,6 @@ description = "the modular source code checker: pep8 pyflakes and co"
 category = "main"
 optional = true
 python-versions = ">=3.8.1"
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 [package.dependencies]
 mccabe = ">=0.7.0,<0.8.0"
@@ -333,9 +151,6 @@ description = "Flake8 plug-in loading the configuration from pyproject.toml"
 category = "main"
 optional = true
 python-versions = ">= 3.6"
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 [package.dependencies]
 Flake8 = ">=5"
@@ -351,10 +166,6 @@ description = "Python humanize utilities"
 category = "main"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
 importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
@@ -369,10 +180,6 @@ description = "Internationalized Domain Names in Applications (IDNA)"
 category = "main"
 optional = false
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 [[package]]
 name = "importlib-metadata"
@@ -381,10 +188,6 @@ description = "Read metadata from Python packages"
 category = "main"
 optional = false
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 [package.dependencies]
 numpy = ">=1.19.5,<1.27.0"
@@ -1410,10 +728,6 @@ description = "Easily download, build, install, upgrade, and uninstall Python pa
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@@ -1427,10 +741,6 @@ description = "threadpoolctl"
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@@ -1439,22 +749,14 @@ description = "Python Library for Tom's Obvious, Minimal Language"
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 [[package]]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
 category = "main"
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 python-versions = ">=3.7"
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 [[package]]
 name = "torch"
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 name = "upolygon"
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 optional = false
 python-versions = ">=3.6"
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 numpy = "*"
@@ -1700,10 +880,6 @@ description = "HTTP library with thread-safe connection pooling, file post, and
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+ml = ["torch", "torchvision", "scikit-learn"]
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+test = ["responses", "pytest", "flake8-pyproject"]
 
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+]
+wheel = [
+    {file = "wheel-0.41.1-py3-none-any.whl", hash = "sha256:473219bd4cbedc62cea0cb309089b593e47c15c4a2531015f94e4e3b9a0f6981"},
+    {file = "wheel-0.41.1.tar.gz", hash = "sha256:12b911f083e876e10c595779709f8a88a59f45aacc646492a67fe9ef796c1b47"},
+]
+zipp = [
+    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
+    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+]
diff --git a/pyproject.toml b/pyproject.toml
index 8124ba44f..fe8236511 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -94,6 +94,7 @@ types-pyyaml = "^6.0.12.9"
 python-dotenv = { version = "^1.0.0", python = ">3.8" }
 opencv-python-headless = { version = "^4.8.0.76", optional = true }
 pyyaml = "^6.0.1"
+pytest-rerunfailures = "^12.0"
 
 [tool.poetry.extras]
 dev = [

From 663df61b1e8409df1673220fa42111f1f147d293 Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Thu, 5 Oct 2023 13:25:32 +0100
Subject: [PATCH 3/6] timing change

---
 e2e_tests/helpers.py     | 2 +-
 e2e_tests/test_darwin.py | 3 +--
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/e2e_tests/helpers.py b/e2e_tests/helpers.py
index d2316d660..af143ff4b 100644
--- a/e2e_tests/helpers.py
+++ b/e2e_tests/helpers.py
@@ -24,7 +24,7 @@ class CLIResult:
     stderr: str
 
 
-SERVER_WAIT_TIME = 5
+SERVER_WAIT_TIME = 10
 
 
 def run_cli_command(
diff --git a/e2e_tests/test_darwin.py b/e2e_tests/test_darwin.py
index 1fb5b8e35..a01d48e44 100644
--- a/e2e_tests/test_darwin.py
+++ b/e2e_tests/test_darwin.py
@@ -4,13 +4,12 @@
 import tempfile
 import uuid
 from pathlib import Path
-from threading import local
 from time import sleep
 from typing import Generator
 
 import pytest
 
-from e2e_tests.helpers import SERVER_WAIT_TIME, assert_cli, run_cli_command
+from e2e_tests.helpers import assert_cli, run_cli_command
 from e2e_tests.objects import ConfigValues, E2EDataset, E2EItem
 from e2e_tests.setup_tests import api_call, create_random_image
 

From 8bc377ff957c73de484d6604768103f65e0e41c0 Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Thu, 5 Oct 2023 13:26:36 +0100
Subject: [PATCH 4/6] dev dependency

---
 pyproject.toml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index fe8236511..354b316cf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -94,7 +94,7 @@ types-pyyaml = "^6.0.12.9"
 python-dotenv = { version = "^1.0.0", python = ">3.8" }
 opencv-python-headless = { version = "^4.8.0.76", optional = true }
 pyyaml = "^6.0.1"
-pytest-rerunfailures = "^12.0"
+pytest-rerunfailures = { version = "^4.8.0.76", optional = true }
 
 [tool.poetry.extras]
 dev = [
@@ -106,6 +106,7 @@ dev = [
     "responses",
     "pytest",
     "flake8-pyproject",
+    "pytest-rerunfailures",
 ]
 test = ["responses", "pytest", "flake8-pyproject"]
 ml = ["torch", "torchvision", "scikit-learn", "albumentations"]

From ad95e08ab1ed8a440c5c5f697d4911ff77de5767 Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Thu, 5 Oct 2023 13:27:00 +0100
Subject: [PATCH 5/6] lock change

---
 poetry.lock | 28 +++++++++++++---------------
 1 file changed, 13 insertions(+), 15 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 3d5cfc89d..a90be53d8 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -125,7 +125,7 @@ name = "exceptiongroup"
 version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
 category = "main"
-optional = false
+optional = true
 python-versions = ">=3.7"
 
 [package.extras]
@@ -218,7 +218,7 @@ name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
 category = "main"
-optional = false
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
@@ -513,7 +513,7 @@ name = "pluggy"
 version = "1.2.0"
 description = "plugin and hook calling mechanisms for python"
 category = "main"
-optional = false
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -578,7 +578,7 @@ name = "pytest"
 version = "7.4.0"
 description = "pytest: simple powerful testing with Python"
 category = "main"
-optional = false
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -595,16 +595,14 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
 
 [[package]]
 name = "pytest-rerunfailures"
-version = "12.0"
+version = "5.0"
 description = "pytest plugin to re-run tests to eliminate flaky failures"
 category = "main"
-optional = false
-python-versions = ">=3.7"
+optional = true
+python-versions = "*"
 
 [package.dependencies]
-importlib-metadata = {version = ">=1", markers = "python_version < \"3.8\""}
-packaging = ">=17.1"
-pytest = ">=6.2"
+pytest = ">=3.6"
 
 [[package]]
 name = "python-dotenv"
@@ -755,7 +753,7 @@ name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
 category = "main"
-optional = false
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
@@ -911,7 +909,7 @@ docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker
 testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
 
 [extras]
-dev = ["black", "isort", "flake8", "mypy", "debugpy", "responses", "pytest", "flake8-pyproject"]
+dev = ["black", "isort", "flake8", "mypy", "debugpy", "responses", "pytest", "flake8-pyproject", "pytest-rerunfailures"]
 medical = ["nibabel", "connected-components-3d"]
 ml = ["torch", "torchvision", "scikit-learn"]
 ocv = ["opencv-python-headless"]
@@ -920,7 +918,7 @@ test = ["responses", "pytest", "flake8-pyproject"]
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.7.0,<3.11"
-content-hash = "0d60e69550d79043f56b55e14097757f0833ed16ea11932e21e571bb53722736"
+content-hash = "ba2e590b16d0b5b4ead3732c5faccebacf057c638b3c51319688563d7f156c54"
 
 [metadata.files]
 argcomplete = [
@@ -1487,8 +1485,8 @@ pytest = [
     {file = "pytest-7.4.0.tar.gz", hash = "sha256:b4bf8c45bd59934ed84001ad51e11b4ee40d40a1229d2c79f9c592b0a3f6bd8a"},
 ]
 pytest-rerunfailures = [
-    {file = "pytest-rerunfailures-12.0.tar.gz", hash = "sha256:784f462fa87fe9bdf781d0027d856b47a4bfe6c12af108f6bd887057a917b48e"},
-    {file = "pytest_rerunfailures-12.0-py3-none-any.whl", hash = "sha256:9a1afd04e21b8177faf08a9bbbf44de7a0fe3fc29f8ddbe83b9684bd5f8f92a9"},
+    {file = "pytest-rerunfailures-5.0.tar.gz", hash = "sha256:5601fcec1ae121a56c1b8b0f92e237aea9f701c3c274a8852c0a1dd7e04cfdf4"},
+    {file = "pytest_rerunfailures-5.0-py2.py3-none-any.whl", hash = "sha256:2ff8c6c1f490acafc6cc85ca1005420675680c52a5aada195ca71e48a1e1ceb7"},
 ]
 python-dotenv = [
     {file = "python-dotenv-1.0.0.tar.gz", hash = "sha256:a8df96034aae6d2d50a4ebe8216326c61c3eb64836776504fcca410e5937a3ba"},

From 51cda9d39b88ed027b69fb0d08ce7bce5049ea74 Mon Sep 17 00:00:00 2001
From: Nathan Perkins <nathan@v7labs.com>
Date: Thu, 5 Oct 2023 14:07:46 +0100
Subject: [PATCH 6/6] lock change

---
 poetry.lock    | 14 ++++++++------
 pyproject.toml |  2 +-
 2 files changed, 9 insertions(+), 7 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index a90be53d8..c864f6952 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -595,14 +595,16 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
 
 [[package]]
 name = "pytest-rerunfailures"
-version = "5.0"
+version = "12.0"
 description = "pytest plugin to re-run tests to eliminate flaky failures"
 category = "main"
 optional = true
-python-versions = "*"
+python-versions = ">=3.7"
 
 [package.dependencies]
-pytest = ">=3.6"
+importlib-metadata = {version = ">=1", markers = "python_version < \"3.8\""}
+packaging = ">=17.1"
+pytest = ">=6.2"
 
 [[package]]
 name = "python-dotenv"
@@ -918,7 +920,7 @@ test = ["responses", "pytest", "flake8-pyproject"]
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.7.0,<3.11"
-content-hash = "ba2e590b16d0b5b4ead3732c5faccebacf057c638b3c51319688563d7f156c54"
+content-hash = "be5332c340212e3c9c201cdd187461bb73cb35c7e7de9310b1a8bc62c5cd6679"
 
 [metadata.files]
 argcomplete = [
@@ -1485,8 +1487,8 @@ pytest = [
     {file = "pytest-7.4.0.tar.gz", hash = "sha256:b4bf8c45bd59934ed84001ad51e11b4ee40d40a1229d2c79f9c592b0a3f6bd8a"},
 ]
 pytest-rerunfailures = [
-    {file = "pytest-rerunfailures-5.0.tar.gz", hash = "sha256:5601fcec1ae121a56c1b8b0f92e237aea9f701c3c274a8852c0a1dd7e04cfdf4"},
-    {file = "pytest_rerunfailures-5.0-py2.py3-none-any.whl", hash = "sha256:2ff8c6c1f490acafc6cc85ca1005420675680c52a5aada195ca71e48a1e1ceb7"},
+    {file = "pytest-rerunfailures-12.0.tar.gz", hash = "sha256:784f462fa87fe9bdf781d0027d856b47a4bfe6c12af108f6bd887057a917b48e"},
+    {file = "pytest_rerunfailures-12.0-py3-none-any.whl", hash = "sha256:9a1afd04e21b8177faf08a9bbbf44de7a0fe3fc29f8ddbe83b9684bd5f8f92a9"},
 ]
 python-dotenv = [
     {file = "python-dotenv-1.0.0.tar.gz", hash = "sha256:a8df96034aae6d2d50a4ebe8216326c61c3eb64836776504fcca410e5937a3ba"},
diff --git a/pyproject.toml b/pyproject.toml
index 354b316cf..4a8bce15e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -94,7 +94,7 @@ types-pyyaml = "^6.0.12.9"
 python-dotenv = { version = "^1.0.0", python = ">3.8" }
 opencv-python-headless = { version = "^4.8.0.76", optional = true }
 pyyaml = "^6.0.1"
-pytest-rerunfailures = { version = "^4.8.0.76", optional = true }
+pytest-rerunfailures = { version = "^12.0", optional = true }
 
 [tool.poetry.extras]
 dev = [