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cramtools.jar and updated README

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1 parent 5e369bd commit 7303a68992787de3541a32a5c43b206cd9f43b23 @vadimzalunin committed Apr 23, 2012
Showing with 8 additions and 4 deletions.
  1. +8 −4 README
  2. BIN cramtools.jar
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12 README
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CRAMTools is a set of Java tools and APIs for efficient compression of sequence read data. Although this is intended as a stable version the code is released as early access. Parts of the CRAMTools are experimental and may not be supported in the future.
http://www.ebi.ac.uk/ena/about/cram_toolkit
-Version 0.7
+Version 0.8
New features:
-Arbitrary tag support
-PG an CO header records
-0x200 bit flag (not passing quality control) support
+Full BAM header is preserved
+Picard 1.66
+Cram2Bam performance
+Huffman performance
+Versioning and build number
+Code cleanup and minor adjustments
+Format compatibility with 0.7
Input files:
Reference sequence in fasta format <fasta file>
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