Extension of the GENIE3 method for the inference of gene regulatory networks from systems genetics data.
This extension is described in the following book chapter (available here):
Gene regulatory network inference from systems genetics data using tree-based methods Huynh-Thu V. A., Wehenkel L., and Geurts P. In: A. de la Fuente (Ed.), Gene Network Inference - Verification of Methods for Systems Genetics Data, Springer, pp. 63-85, 2013.
Two implementations are available: Python and MATLAB. Each folder contains a step-by-step tutorial showing how to run the code.