Extension of the GENIE3 method for the inference of gene regulatory networks from systems genetics data.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
GENIE3_sysgen_MATLAB
GENIE3_sysgen_python
README.md

README.md

GENIE3_sysgen

Extension of the GENIE3 method for the inference of gene regulatory networks from systems genetics data.

This extension is described in the following book chapter (available here):

Gene regulatory network inference from systems genetics data using tree-based methods 
Huynh-Thu V. A., Wehenkel L., and Geurts P.
In: A. de la Fuente (Ed.), Gene Network Inference - Verification of Methods for Systems Genetics Data, Springer, pp. 63-85, 2013. 

Two implementations are available: Python and MATLAB. Each folder contains a step-by-step tutorial showing how to run the code.