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Roman Valls Guimera committed Nov 1, 2012
1 parent 8feb3d3 commit f174d1b
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions nextgen/tests/test_automated_analysis.py
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Expand Up @@ -76,7 +76,7 @@ def test_3_full_pipeline(self):
self._install_test_files(self.data_dir)
with make_workdir():
cl = ["automated_initial_analysis.py",
get_post_process_yaml(),
get_post_process_yaml(self),
os.path.join(self.data_dir, os.pardir, "110106_FC70BUKAAXX"),
os.path.join(self.data_dir, "run_info.yaml")]
subprocess.check_call(cl)
Expand All @@ -88,7 +88,7 @@ def test_4_empty_fastq(self):
self._install_test_files(self.data_dir)
with make_workdir():
cl = ["automated_initial_analysis.py",
get_post_process_yaml(),
get_post_process_yaml(self),
os.path.join(self.data_dir, os.pardir, "110221_empty_FC12345AAXX"),
os.path.join(self.data_dir, "run_info-empty.yaml")]
subprocess.check_call(cl)
Expand All @@ -100,7 +100,7 @@ def test_2_rnaseq(self):
self._install_test_files(self.data_dir)
with make_workdir():
cl = ["automated_initial_analysis.py",
get_post_process_yaml(),
get_post_process_yaml(self),
os.path.join(self.data_dir, os.pardir, "110907_ERP000591"),
os.path.join(self.data_dir, "run_info-rnaseq.yaml")]
subprocess.check_call(cl)
Expand All @@ -124,7 +124,7 @@ def test_5_bam(self):
self._install_test_files(self.data_dir)
with make_workdir():
cl = ["automated_initial_analysis.py",
get_post_process_yaml(),
get_post_process_yaml(self),
os.path.join(self.data_dir, os.pardir, "100326_FC6107FAAXX"),
os.path.join(self.data_dir, "run_info-bam.yaml")]
subprocess.check_call(cl)

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