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docker vanallenlab/moalmanac:0.4.3_v.2023-02-02 run error #11
Description
maf file include KARS:c.38G>A:p.G13D muation , when run moalmanac.py ,it print
Traceback (most recent call last):
File "/moalmanac/moalmanac.py", line 357, in
main(patient_dict, inputs_dict, output_directory)
File "/moalmanac/moalmanac.py", line 230, in main
plot=plot_preclinical
File "/moalmanac/moalmanac.py", line 124, in process_preclinical_efficacy
efficacy_dictionary = investigator.SensitivityDictionary.create(dbs, dataframe)
File "/moalmanac/investigator.py", line 142, in create
mapped = list(mappings[sensitive_therapy][cls.gdsc])
KeyError: 'Sotorasib'
Activity
brendanreardon commentedon Mar 10, 2023
Hi @ArsFc, thank you for identifying this bug! We believe that this has been resolved in this pull request that we were scheduled to merge today anyway, we were able to sneak in the bug fix. Can you try pulling the latest main branch on GitHub or with vanallenlab/moalmanac:0.4.5_v.2023-02-02 from Docker to see if this problem persists for you?
ArsFc commentedon Mar 13, 2023
Thanks for the timely reply, form docker the problem is solved ...
brendanreardon commentedon Mar 13, 2023
Great! We're very glad to hear that. Don't hesitate to reach out if you notice anything else off.