maelstrom analysis

vanheeringen-lab · Nov 19, 2018 · e4776ae · e4776ae
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diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,5 @@
 motif_database_comparison/data/**/*gz
 **/.snakemake/
 cluster_motifs/out/*gz
+**/maelstrom.out/*
+hematopoietic_enhancers/local/*
diff --git a/hematopoietic_enhancers/data/H3K27ac.table.hg38.top50K.tsv.gz b/hematopoietic_enhancers/data/H3K27ac.table.hg38.top50K.tsv.gz
diff --git a/hematopoietic_enhancers/data/H3K27ac.table.hg38.tsv.gz b/hematopoietic_enhancers/data/H3K27ac.table.hg38.tsv.gz
diff --git a/hematopoietic_enhancers/maelstrom_hematopoietic_H3K27ac.ipynb b/hematopoietic_enhancers/maelstrom_hematopoietic_H3K27ac.ipynb
diff --git a/hematopoietic_enhancers/out/GM.5.0.C2H2_ZF_Homeodomain.0002.tree.png b/hematopoietic_enhancers/out/GM.5.0.C2H2_ZF_Homeodomain.0002.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.Ets.0015.tree.png b/hematopoietic_enhancers/out/GM.5.0.Ets.0015.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.GATA.0001.tree.png b/hematopoietic_enhancers/out/GM.5.0.GATA.0001.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.Homeodomain.0125.tree.png b/hematopoietic_enhancers/out/GM.5.0.Homeodomain.0125.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.Paired_box.0009.tree.png b/hematopoietic_enhancers/out/GM.5.0.Paired_box.0009.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.Runt.0001.tree.png b/hematopoietic_enhancers/out/GM.5.0.Runt.0001.tree.png
diff --git a/hematopoietic_enhancers/out/GM.5.0.bZIP.0052.tree.png b/hematopoietic_enhancers/out/GM.5.0.bZIP.0052.tree.png