diff --git a/example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p00_small.tif b/data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p00_small.tif
similarity index 100%
rename from example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p00_small.tif
rename to data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p00_small.tif
diff --git a/example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p01_small.tif b/data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p01_small.tif
similarity index 100%
rename from example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p01_small.tif
rename to data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p01_small.tif
diff --git a/example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p02_small.tif b/data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p02_small.tif
similarity index 100%
rename from example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p02_small.tif
rename to data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/journal_pcbi_1005177_s01_p02_small.tif
diff --git a/example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/metadata b/data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/metadata
similarity index 100%
rename from example_data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/metadata
rename to data/raw_data/dynamic/2d/fluo/HEK293/Nuclear_H2B-mClover/journal_pcbi_1005177/metadata
diff --git a/example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0010_Dapii.tif b/data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0010_Dapii.tif
similarity index 100%
rename from example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0010_Dapii.tif
rename to data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0010_Dapii.tif
diff --git a/example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0011_Dapii.tif b/data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0011_Dapii.tif
similarity index 100%
rename from example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0011_Dapii.tif
rename to data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0011_Dapii.tif
diff --git a/example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0012_Dapii.tif b/data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0012_Dapii.tif
similarity index 100%
rename from example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0012_Dapii.tif
rename to data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/20190514_A549_G07_0012_Dapii.tif
diff --git a/example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/metadata b/data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/metadata
similarity index 100%
rename from example_data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/metadata
rename to data/raw_data/static/2d/fluo/A549/Nuclear_Hoescht33342/20190514_EP01/metadata
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_0.tif b/data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_0.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_0.tif
rename to data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_0.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_1.tif b/data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_1.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_1.tif
rename to data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_1.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_2.tif b/data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_2.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_2.tif
rename to data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/20200116_DCIS_Point2304_crop_2.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/metadata b/data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/metadata
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/metadata
rename to data/raw_data/static/2d/mibi/DCIS/Nuclear_DNA/20200116_DCIS/metadata
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_0.tif b/data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_0.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_0.tif
rename to data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_0.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_1.tif b/data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_1.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_1.tif
rename to data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_1.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_2.tif b/data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_2.tif
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_2.tif
rename to data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/Point2304_crop_2.tif
diff --git a/example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/metadata b/data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/metadata
similarity index 100%
rename from example_data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/metadata
rename to data/raw_data/static/2d/mibi/DCIS/WholeCell_NaKATPase/20200116_DCIS/metadata
diff --git a/example_data/raw_data/static/3d/Phase/A549/20190514_EP01/20190514_A549_F07_0002_small.tif b/data/raw_data/static/3d/Phase/A549/20190514_EP01/20190514_A549_F07_0002_small.tif
similarity index 100%
rename from example_data/raw_data/static/3d/Phase/A549/20190514_EP01/20190514_A549_F07_0002_small.tif
rename to data/raw_data/static/3d/Phase/A549/20190514_EP01/20190514_A549_F07_0002_small.tif
diff --git a/example_data/raw_data/static/3d/Phase/A549/20190514_EP01/metadata b/data/raw_data/static/3d/Phase/A549/20190514_EP01/metadata
similarity index 100%
rename from example_data/raw_data/static/3d/Phase/A549/20190514_EP01/metadata
rename to data/raw_data/static/3d/Phase/A549/20190514_EP01/metadata