From 26ae2b240cb2d0a0e81091ffd521ed287f28f7f6 Mon Sep 17 00:00:00 2001
From: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de>
Date: Thu, 25 Aug 2022 14:42:08 +0200
Subject: [PATCH] Fix bug with G1K freqs in SV filtration (#619)

Closes: #619
Related-Issue: #619
Projected-Results-Impact: require-revalidation
---
 HISTORY.rst    | 2 ++
 svs/queries.py | 3 ++-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/HISTORY.rst b/HISTORY.rst
index 35b245865..061af66bc 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -44,6 +44,7 @@ End-User Summary
 - Adding distinct de novo genotype setting (#562).
 - Adding section presets for SV filtration (#616).
 - Adjusting SV filtration presets (#616).
+- Fix bug with thousand genomes frequencies in SV filtration (#619).
 
 Full Change List
 ================
@@ -83,6 +84,7 @@ Full Change List
 - Adding distinct de novo genotype setting (#562).
 - Adding section presets for SV filtration (#616).
 - Adjusting SV filtration presets (#616).
+- Fix bug with thousand genomes frequencies in SV filtration (#619).
 
 ------
 v1.2.0
diff --git a/svs/queries.py b/svs/queries.py
index 95e5bb2e8..a96629182 100644
--- a/svs/queries.py
+++ b/svs/queries.py
@@ -385,6 +385,7 @@ def extend_fields(self, _query_parts):
     def extend_conditions(self, _query_parts):
         result = []
         for token, _, _ in self.TOKEN_MODEL_FIELD:
+            entity = "alleles" if token == "g1k" else "carriers"
             if (
                 self.kwargs.get("%s_enabled" % token, False)
                 and ("%s_overlap_count" % token) in self.fields
@@ -392,7 +393,7 @@ def extend_conditions(self, _query_parts):
             ):
                 result.append(
                     self.fields["%s_overlap_count" % token]
-                    <= self.kwargs["%s_max_carriers" % token]
+                    <= self.kwargs["%s_max_%s" % (token, entity)]
                 )
         return result