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This code is a prototype for the HiCOMB2017 submission titled 'Parallel and Memory-efficient Preprocessing for Metagenome Assembly'.


  1. Vasudevan Rengasamy
  2. Paul Medvedev
  3. Kamesh Madduri

Compile/Run: Modify and execute the same. The script uses input files in data folder and creates output FASTQ files in output folder.