Datajoint @ Kavli Documentation

This repository contains the documentation on the two core pipelines in use in the Moser Group at the Kavli Institute.

Contents

• Usage

  • Getting started with Datajoint
    • Getting Started in Python
    • Getting Started in Matlab
    • Where to find help
    • Nomenclature: terms used in ephys and imaging pipelines
  • Ephys
    • Connecting to the pipeline
    • Ingesting new data via the web GUI
    • Fetching data from the pipeline
  • Imaging
    • Overview
    • Installation
    • Folder logic
    • Adding sessions
    • Helper notebooks
    • Synchronisation
    • FOV Unwarping
    • Desktop screening GUI

• Technical details

  • Pipeline architecture
  • Database server