Tutorials for metabarcode analysis
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R_dada2
databases
fastq_carbom
mothur
.gitattributes
.gitignore
Comparison different methods 1.0.xlsx
LICENSE.txt
README.md

README.md

Tutorials for metabarcode analysis

In this repository, you will find a set of tutorials of metabarcode analyses using different approaches

How to use

Download and uncompress

  • The whole set of tutorials from the download link (top-right above file list)

  • PR2 database. This file must be decompressed in the /databases directory

Install the following software :

install.packages("dplyr")     # To manipulate dataframes
install.packages("stringr")   # To strings
install.packages("ggplot2")   # To do plots
install.packages("readxl")    # To read excel files
install.packages("tibble")    # To work with data frames
install.packages("tidyr")    # To work with data frames

source("https://bioconductor.org/biocLite.R")
biocLite('dada2')             # metabarcode data analysis
biocLite('phyloseq')          # metabarcode data analysis
biocLite('Biostrings')        # needed for fastq.geometry

Follow the step by step instructions :

Issues or questions

Please post here