| title | description | published | date | tags | editor |
|---|---|---|---|---|---|
Genome2D |
Genome2D webserver for Analysis and Visualization of Bacterial Genomes and Transcriptomes |
true |
2020-08-28 17:34:06 UTC |
genomes, bacteria, genome sets, sequence analysis, comparative genomics, resource center, transcriptomics, transcriptomes, data visualization, toolbox, webserver |
markdown |
Genome2D gives access to all publically available fully (no WGS) sequenced bacterial genomes of RefSeq and Genbank. In addition, all genomes are re-annotated to build a database of functional classes (COG, GO, KEGG, operons, keywords, Interpro, PFAM, etc.) which are used in transcriptome data analysis (RNA-Seq and DNA microarray).
Some data set transformations, such as reformatting DNA and Protein files, aligning tables, getting multiple DNA fragments, retrieving annotations of gene lists etc. are supported {.is-info}
Genome2D is a collection of resources and tools for genomics and transcriptomics analysis of prokaryotes. Users should take care to cite specific tools within Genome2D when appropriate. {.is-warning}
- Genome2D Main Page {.links-list}
- This webserver provides a collection of genome resources and genomics analysis tools. Users should take care to cite tools as appropriate.
- The server provides access to tools for RNA-Seq analysis as well as genomic regulatory analysis (predicting promoter, terminator, etc sequences).
- Data extraction, manipulation and reformat tools can become handy.
- The webserver is easy to use, providing access to analysis tools and resources. Tools without formal help pages have simple, detailed instructions.
{.links-list}
- Baerends, R. J., Smits, W. K., de Jong, A., Hamoen, L. W., Kok, J., & Kuipers, O. P. (2004). Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data. Genome biology, 5(5), 1-6. {.grid-list}