version:1 :debug:main Starting logging for R-dbarts @0.9-26_0 :debug:sysinfo Mac OS X 10.6.8 (darwin/10.8.0) arch i386 :debug:sysinfo MacPorts 2.9.1 :debug:sysinfo Xcode 3.2.6, CLT 1.0.0.9000000000.1.1248867338 :debug:sysinfo SDK 10.6 :debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.6 :msg:main ---> Computing dependencies for R-dbarts:info:main .:debug:main Searching for dependency: gcc13 :debug:main Found Dependency: receipt exists for gcc13 :debug:main Searching for dependency: R :debug:main Found Dependency: receipt exists for R :debug:main Searching for dependency: libgcc :debug:main Found Dependency: receipt exists for libgcc :debug:main Searching for dependency: R-CRAN-recommended :debug:main Found Dependency: receipt exists for R-CRAN-recommended :debug:main Executing org.macports.main (R-dbarts) :debug:main dropping privileges: euid changed to 502, egid changed to 505. :debug:fetch fetch phase started at Mon Feb 19 04:44:59 CST 2024 :notice:fetch ---> Fetching distfiles for R-dbarts :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0 :debug:fetch Executing org.macports.fetch (R-dbarts) :debug:fetch Privilege de-escalation not attempted as not running as root. :debug:checksum checksum phase started at Mon Feb 19 04:45:00 CST 2024 :notice:checksum ---> Verifying checksums for R-dbarts :debug:checksum Executing org.macports.checksum (R-dbarts) :info:checksum ---> Checksumming dbarts_0.9-26.tar.gz :debug:checksum Calculated (rmd160) is da128beb4336efc33f5c03c76d982153bf53c7b0 :debug:checksum Correct (rmd160) checksum for dbarts_0.9-26.tar.gz :debug:checksum Calculated (sha256) is bea5bb323c647761b575b805f4f7027f2718facab4ed5db1b1bc8f40e40fe5d0 :debug:checksum Correct (sha256) checksum for dbarts_0.9-26.tar.gz :debug:checksum Calculated (size) is 851760 :debug:checksum Correct (size) checksum for dbarts_0.9-26.tar.gz :debug:checksum Privilege de-escalation not attempted as not running as root. :debug:extract extract phase started at Mon Feb 19 04:45:00 CST 2024 :notice:extract ---> Extracting R-dbarts :debug:extract Executing org.macports.extract (R-dbarts) :info:extract ---> Extracting dbarts_0.9-26.tar.gz :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R-dbarts/dbarts_0.9-26.tar.gz' :debug:extract Environment: :debug:extract CC_PRINT_OPTIONS='YES' :debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/.CC_PRINT_OPTIONS' :debug:extract CPATH='/opt/local/include' :debug:extract DEVELOPER_DIR='/Developer' :debug:extract LIBRARY_PATH='/opt/local/lib' :debug:extract MACOSX_DEPLOYMENT_TARGET='10.6' :info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work" && /opt/x86_64/bin/gzip -dc '/opt/local/var/macports/distfiles/R-dbarts/dbarts_0.9-26.tar.gz' | /opt/x86_64/bin/gnutar --no-same-owner -xf - :debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work" && /opt/x86_64/bin/gzip -dc '/opt/local/var/macports/distfiles/R-dbarts/dbarts_0.9-26.tar.gz' | /opt/x86_64/bin/gnutar --no-same-owner -xf - :debug:extract euid/egid changed to: 0/0 :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work to macports :debug:extract euid/egid changed to: 502/505 :debug:extract Privilege de-escalation not attempted as not running as root. :debug:patch patch phase started at Mon Feb 19 04:45:00 CST 2024 :debug:patch Executing org.macports.patch (R-dbarts) :debug:patch Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Mon Feb 19 04:45:00 CST 2024 :notice:configure ---> Configuring R-dbarts :debug:configure Preferred compilers: macports-gcc-13 macports-gcc-12 macports-gcc-11 macports-gcc-10 macports-gcc-9 macports-gcc-8 macports-gcc-7 macports-gcc-6 macports-gcc-5 :debug:configure Using compiler 'MacPorts GCC 13' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: libgcc R-CRAN-recommended gcc13 R :debug:configure Executing proc-pre-org.macports.configure-configure-1 :debug:configure compilers.enforce_c list: :debug:configure compilers.enforce_fortran list: :debug:configure compilers.enforce_some_fortran list: :debug:configure compilers PG: GCC version reports being UNKNOWN to MacPorts :debug:configure compilers PG: RPATH added to ldflags as GCC version is UNKNOWN :debug:configure Executing org.macports.configure (R-dbarts) :debug:configure Environment: :debug:configure CC='/opt/local/bin/gcc-mp-13' :debug:configure CC_PRINT_OPTIONS='YES' :debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/.CC_PRINT_OPTIONS' :debug:configure CFLAGS='-pipe -Os -arch ppc' :debug:configure CPATH='/opt/local/include' :debug:configure CPPFLAGS='-I/opt/local/include' :debug:configure CXX='/opt/local/bin/g++-mp-13' :debug:configure CXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -arch ppc' :debug:configure DEVELOPER_DIR='/Developer' :debug:configure DYLD_LIBRARY_PATH='/opt/local/lib/libgcc' :debug:configure F77='/opt/local/bin/gfortran-mp-13' :debug:configure F90='/opt/local/bin/gfortran-mp-13' :debug:configure F90FLAGS='-pipe -Os -m32' :debug:configure FC='/opt/local/bin/gfortran-mp-13' :debug:configure FCFLAGS='-pipe -Os -m32' :debug:configure FFLAGS='-pipe -Os -m32' :debug:configure INSTALL='/opt/x86_64/bin/ginstall -c' :debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -arch ppc' :debug:configure LIBRARY_PATH='/opt/local/lib' :debug:configure MACOSX_DEPLOYMENT_TARGET='10.6' :debug:configure OBJC='/opt/local/bin/gcc-mp-13' :debug:configure OBJCFLAGS='-pipe -Os -arch ppc' :debug:configure OBJCXX='/opt/local/bin/g++-mp-13' :debug:configure OBJCXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -arch ppc' :info:configure Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/dbarts" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes --keep-empty-dirs :debug:configure system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/dbarts" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes --keep-empty-dirs :info:configure * checking for file ‘./DESCRIPTION’ ... OK :info:configure * preparing ‘dbarts’: :info:configure * checking DESCRIPTION meta-information ... OK :info:configure * cleaning src :info:configure * running ‘cleanup’ :info:configure * checking vignette meta-information ... OK :info:configure * checking for LF line-endings in source and make files and shell scripts :info:configure * checking for empty or unneeded directories :info:configure * building ‘dbarts_0.9-26.tar.gz’ :debug:configure Executing portconfigure::configure_finish :debug:configure Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Mon Feb 19 04:45:06 CST 2024 :notice:build ---> Building R-dbarts :debug:build Executing proc-pre-org.macports.build-build-0 :info:build xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/build :debug:build Executing org.macports.build (R-dbarts) :debug:build Environment: :debug:build CC_PRINT_OPTIONS='YES' :debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/.CC_PRINT_OPTIONS' :debug:build CPATH='/opt/local/include' :debug:build DEVELOPER_DIR='/Developer' :debug:build LIBRARY_PATH='/opt/local/lib' :debug:build MACOSX_DEPLOYMENT_TARGET='10.6' :info:build Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/dbarts" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/build --install-tests :debug:build system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/dbarts" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/build --install-tests :info:build * installing *source* package ‘dbarts’ ... :info:build ** package ‘dbarts’ successfully unpacked and MD5 sums checked :info:build ** using staged installation :info:build checking for gcc... /opt/local/bin/gcc-mp-13 :info:build checking whether the C compiler works... yes :info:build checking for C compiler default output file name... a.out :info:build checking for suffix of executables... :info:build checking whether we are cross compiling... no :info:build checking for suffix of object files... o :info:build checking whether the compiler supports GNU C... yes :info:build checking whether /opt/local/bin/gcc-mp-13 accepts -g... yes :info:build checking for /opt/local/bin/gcc-mp-13 option to enable C11 features... none needed :info:build checking how to run the C preprocessor... /opt/local/bin/gcc-mp-13 -E :info:build checking whether the compiler supports GNU C++... yes :info:build checking whether /opt/local/bin/g++-mp-13 -std=gnu++17 accepts -g... yes :info:build checking for /opt/local/bin/g++-mp-13 -std=gnu++17 option to enable C++11 features... none needed :info:build checking how to run the C++ preprocessor... /opt/local/bin/g++-mp-13 -std=gnu++17 -E :info:build checking for C/C++ restrict keyword... no :info:build checking for stdio.h... yes :info:build checking for stdlib.h... yes :info:build checking for string.h... yes :info:build checking for inttypes.h... yes :info:build checking for stdint.h... yes :info:build checking for strings.h... yes :info:build checking for sys/stat.h... yes :info:build checking for sys/types.h... yes :info:build checking for unistd.h... yes :info:build checking whether byte ordering is bigendian... yes :info:build checking build system type... powerpc-apple-darwin10.8.0 :info:build checking host system type... powerpc-apple-darwin10.8.0 :info:build checking for C compiler vendor... gnu :info:build checking whether C compiler accepts ... yes :info:build checking for a sed that does not truncate output... /usr/bin/sed :info:build checking for grep that handles long lines and -e... /opt/local/bin/ggrep :info:build checking for egrep... /opt/local/bin/ggrep -E :info:build checking whether /opt/local/bin/gcc-mp-13 is Clang... no :info:build checking whether pthreads work with "-pthread" and "-lpthread"... yes :info:build checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE :info:build checking whether more special flags are required for pthreads... no :info:build checking for PTHREAD_PRIO_INHERIT... yes :info:build checking for cstdint... yes :info:build checking for sys/time.h... yes :info:build checking for unistd.h... (cached) yes :info:build checking for malloc.h... no :info:build checking for int64_t... yes :info:build checking for uint64_t... yes :info:build checking size of size_t... 4 :info:build checking alignment of void*... 4 :info:build checking for gettimeofday... yes :info:build checking for clock_gettime... yes :info:build checking for ffs... yes :info:build checking for size_t... yes :info:build checking for working alloca.h... yes :info:build checking for alloca... yes :info:build checking for working posix_memalign... yes :info:build checking for snprintf... yes :info:build checking if g++ supports namespace std... yes :info:build checking whether snprintf is in std::... yes :info:build checking for log1p... yes :info:build checking whether log1p is in std::... no :info:build configure: creating ./config.status :info:build config.status: creating src/Makevars :info:build config.status: creating src/config.hpp :info:build config.status: creating src/dbarts/config.hpp :info:build config.status: creating src/misc/config.h :info:build config.status: creating src/external/config.h :info:build config.status: creating inst/include/dbarts/types.hpp :info:build config.status: creating src/include/misc/types.h :info:build ** libs :info:build using C compiler: ‘gcc-mp-13 (MacPorts gcc13 13.2.0_4+stdlib_flag) 13.2.0’ :info:build using C++ compiler: ‘g++-mp-13 (MacPorts gcc13 13.2.0_4+stdlib_flag) 13.2.0’ :info:build Warning in system2("xcrun", "--show-sdk-path", TRUE, TRUE) : :info:build running command ''xcrun' --show-sdk-path 2>&1' had status 64 :info:build using SDK: ‘NA’‘NA’‘NA’‘NA’‘NA’‘NA’ :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_C_interface.cpp -o R_C_interface.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_interface.cpp -o R_interface.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_interface_common.cpp -o R_interface_common.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_interface_crossvalidate.cpp -o R_interface_crossvalidate.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_interface_rbart.cpp -o R_interface_rbart.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c R_interface_sampler.cpp -o R_interface_sampler.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c crossvalidate.cpp -o crossvalidate.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c guessNumCores.cpp -o guessNumCores.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -Iinclude -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -c makeModelMatrixFromDataFrame.c -o makeModelMatrixFromDataFrame.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c bartFit.cpp -o bartFit.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c binaryIO.cpp -o binaryIO.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c birthDeathRule.cpp -o birthDeathRule.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c changeRule.cpp -o changeRule.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c functions.cpp -o functions.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c likelihood.cpp -o likelihood.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c node.cpp -o node.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c parameterPrior.cpp -o parameterPrior.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c state.cpp -o state.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c swapRule.cpp -o swapRule.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c tree.cpp -o tree.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../../inst/include -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c treePrior.cpp -o treePrior.o :info:build ar rv ../dbarts.a bartFit.o binaryIO.o birthDeathRule.o changeRule.o functions.o likelihood.o node.o parameterPrior.o state.o swapRule.o tree.o treePrior.o :info:build ar: creating archive ../dbarts.a :info:build a - bartFit.o :info:build a - binaryIO.o :info:build a - birthDeathRule.o :info:build a - changeRule.o :info:build a - functions.o :info:build a - likelihood.o :info:build a - node.o :info:build a - parameterPrior.o :info:build a - state.o :info:build a - swapRule.o :info:build a - tree.o :info:build a - treePrior.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c io.c -o io.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c randomBase.c -o randomBase.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c randomNorm.c -o randomNorm.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c random.c -o random.o :info:build ar rv ../external.a io.o randomBase.o randomNorm.o random.o :info:build ar: creating archive ../external.a :info:build a - io.o :info:build a - randomBase.o :info:build a - randomNorm.o :info:build a - random.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c adaptiveRadixTree.c -o adaptiveRadixTree.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c binaryIO.c -o binaryIO.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c blockingThreadManager.c -o blockingThreadManager.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c hierarchicalThreadManager.c -o hierarchicalThreadManager.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c linearAlgebra.c -o linearAlgebra.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c moments.c -o moments.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c partition.c -o partition.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c simd.c -o simd.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c string.c -o string.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -fPIC -pipe -Os -arch ppc -fPIC -c thread.c -o thread.o :info:build ar rv ../misc.a adaptiveRadixTree.o binaryIO.o blockingThreadManager.o hierarchicalThreadManager.o linearAlgebra.o moments.o partition.o simd.o string.o thread.o :info:build ar: creating archive ../misc.a :info:build a - adaptiveRadixTree.o :info:build a - binaryIO.o :info:build a - blockingThreadManager.o :info:build a - hierarchicalThreadManager.o :info:build a - linearAlgebra.o :info:build a - moments.o :info:build a - partition.o :info:build a - simd.o :info:build a - string.o :info:build a - thread.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -pipe -Os -arch ppc -fPIC -c bounds.c -o bounds.o :info:build /opt/local/bin/gcc-mp-13 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../include -pthread -isystem/opt/local/include/LegacySupport -I/opt/local/include -pipe -Os -arch ppc -fPIC -c util.c -o util.o :info:build ar rv ../rc.a bounds.o util.o :info:build ar: creating archive ../rc.a :info:build a - bounds.o :info:build a - util.o :info:build /opt/local/bin/g++-mp-13 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/Library/Frameworks/R.framework/Resources/lib -Wl,-headerpad_max_install_names -L/opt/local/lib -lMacportsLegacySupport -Wl,-rpath,/opt/local/lib/libgcc -arch ppc -o dbarts.so R_C_interface.o R_interface.o R_interface_common.o R_interface_crossvalidate.o R_interface_rbart.o R_interface_sampler.o crossvalidate.o guessNumCores.o makeModelMatrixFromDataFrame.o dbarts.a external.a misc.a rc.a -pthread -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation :info:build ld: in dbarts.a, archive has no table of contents :info:build collect2: error: ld returned 1 exit status :info:build make: *** [dbarts.so] Error 1 :info:build ERROR: compilation failed for package ‘dbarts’ :info:build * removing ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/build/dbarts’ :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/dbarts" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/work/build --install-tests :info:build Exit code: 1 :error:build Failed to build R-dbarts: command execution failed :debug:build Error code: CHILDSTATUS 43966 1 :debug:build Backtrace: command execution failed :debug:build while executing :debug:build "system {*}$notty {*}$callback {*}$nice $fullcmdstring" :debug:build invoked from within :debug:build "command_exec -callback portprogress::target_progress_callback build" :debug:build (procedure "portbuild::build_main" line 10) :debug:build invoked from within :debug:build "$procedure $targetname" :error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-dbarts/R-dbarts/main.log for details.