Accompanying datasets and analyses for Evolutionary genomics: statistical and computational methods, Ch. Evolution of viral genomes: interplay between selection, recombination and other forces.
datasets/contains all datasets used in the main body of the book chapter analyses.
results/contains all markdown output and JSON files generated from HyPhy analysis of data in
exercises/contains datasets and expected results for book chapter exercises
figures/contain figures used in book chapter manuscript
preparation/contains files, scripts, raw data to generate HIV1, H3, and PB2 datasets for analyses
Please direct any questions to