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Accompanying datasets and analyses for Evolutionary genomics: statistical and computational methods, Ch. Evolution of viral genomes: interplay between selection, recombination and other forces.

  • datasets/ contains all datasets used in the main body of the book chapter analyses.
  • results/ contains all markdown output and JSON files generated from HyPhy analysis of data in datasets/
  • exercises/ contains datasets and expected results for book chapter exercises
  • figures/ contain figures used in book chapter manuscript
  • preparation/ contains files, scripts, raw data to generate HIV1, H3, and PB2 datasets for analyses

Please direct any questions to or