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Commits on Oct 5, 2017
  1. Merge pull request #659 from veg/2.3.5

    stevenweaver committed Oct 5, 2017
    Xcode 9 compatibility
Commits on Sep 29, 2017
  1. Merge pull request #623 from veg/2.3.4

    stevenweaver committed Sep 29, 2017
    2.3.4
  2. Merge pull request #653 from sjspielman/2.3.4

    stevenweaver committed Sep 29, 2017
    Minor bug fix to ProteinFitter w/ MPI exec
Commits on Sep 28, 2017
  1. Merge pull request #650 from sjspielman/2.3.4

    stevenweaver committed Sep 28, 2017
    +F amino acid models
  2. Working implementation of +F. Again, proteinfitter not guaranteed to …

    sjspielman committed Sep 28, 2017
    …work, but rest is good
Commits on Sep 27, 2017
  1. Merge pull request #648 from sjspielman/2.3.4

    stevenweaver committed Sep 27, 2017
    Updated prompt 3 to be just relative rates analyses and hiding the pr…
  2. Updated prompt 3 to be just relative rates analyses and hiding the pr…

    sjspielman committed Sep 27, 2017
    …otein fitter from prompt
  3. Merge pull request #644 from sjspielman/2.3.4

    sjspielman committed Sep 27, 2017
    Binary model, JC69 nucleotide model, and minor cleanups to relative_nucleotide_rates.bf
  4. Added nucleotide JC69, changed protein model name from JC->JC69, mino…

    sjspielman committed Sep 27, 2017
    …r debugging for rel nuc rates
  5. Revert "Merge branch 'develop' into 2.3.4"

    stevenweaver committed Sep 27, 2017
    This reverts commit 9053b46, reversing
    changes made to e086b5f.
Commits on Sep 22, 2017
  1. binary implemented

    sjspielman committed Sep 22, 2017
Commits on Sep 21, 2017
  1. Closes #640

    ArtPoon committed Sep 21, 2017
    Revised help text in `modelParameters.mdl`
  2. FString.cpp has been 90% reviewed and now compiles; other syntax erro…

    spond committed Sep 21, 2017
    …r fixes and minor refactors needed to support and clean up _FString
Commits on Sep 20, 2017
  1. Merge pull request #638 from sjspielman/2.3.4

    stevenweaver committed Sep 20, 2017
    Removed  hardcoding in BS_REL.bf and added necessary term. Updated gr…
  2. Merge pull request #637 from stevenweaver/2.3.4

    stevenweaver committed Sep 20, 2017
    Adding initial tests for RELAX and BUSTED
  3. Removed hardcoding in BS_REL.bf and added necessary term. Updated gra…

    sjspielman committed Sep 20, 2017
    …mmatical issues w/ P-value prompt in FEL/MEME/SLAC
Commits on Sep 19, 2017
Commits on Sep 18, 2017
  1. batchlan* compile

    spond committed Sep 18, 2017
  2. batchlanruntime.cpp compiles

    spond committed Sep 18, 2017
  3. batchlan2.cpp compiles

    spond committed Sep 18, 2017