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adding a square root transformation #243

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sydneyg opened this issue Jul 12, 2017 · 4 comments
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adding a square root transformation #243

sydneyg opened this issue Jul 12, 2017 · 4 comments
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@sydneyg
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sydneyg commented Jul 12, 2017 •
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Hi @Microbiology can you please add a capability to do a square root transformation of the median/mean of the subsampled OTU tables prior to making the Bray-Curtis distance Matrix?

Thanks for this function! It looks awesome! This is for the avgdist.Rd function
@gavinsimpson gavinsimpson mentioned this issue Jul 12, 2017
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@jarioksa
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The same comment as for issue #242: the avgdist function does not find median/mean of subsampled OTU tables, but mean of dissimilarities.

@sydneyg
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sydneyg commented Jul 13, 2017

Thank you Jari, that is correct. I want to find the median of the dissimilarity matrices rather than the mean of them.

@Microbiology Microbiology mentioned this issue Jul 29, 2017
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@Microbiology
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I added this functionality and included it in a pull request.

@jarioksa
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jarioksa commented Aug 7, 2017

Closed with PR #244

@jarioksa jarioksa closed this as completed Aug 7, 2017
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@jarioksa @sydneyg @Microbiology