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Welcome to velocyto.py!

Velocyto is a library for the analysis of RNA velocity.

Velocyto includes a :ref:`command line tool <cli>` and an :ref:`analysis pipeline <analysis>`

Warning

CLI API has been improved and differs from previous versions. Please refer to the updated :ref:`CLI tutorial <cli>` and :ref:`API session <cliapi>` to know more about the changes.

Warning

velocyto-team is about to release velocyto.py v1.0 in the meanwhile API will be subject to minor changes until 1.0 release.

Note

Please do not hesitate to report issues on our Github page. We try to respond within the few hours to all the users.

Contents

.. toctree::
   :hidden:

   self

.. toctree::

   install/index

.. toctree::

   tutorial/index

.. toctree::

   fullapi/index

.. toctree::

   notebooks/index

.. toctree::

   changelog

.. toctree::

   license/index

.. toctree::

   citing/index

Indices and tables