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First this is a great tool and has eased a few things that I work on, so thanks!
One of the things I find myself needing to do occationally is remove stuff. The support for ->delete seems inconsistent and it would be nice if it was more uniform. For example:
Right now it looks like only pin->delete and cell->delete are supported. I understand that using these could easily corrupt your netlist but it seems like these could be at the users risk. For example if you delete a net that is actually used then those pins would obviously no longer have a connection.
Original Redmine Comment
I anticipated your request and added it last week :)
I haven't released the new version yet, but you can get the pre-release version from the GIT repository.
If there's anything missing, please feel free to reopen; it hasn't gotten much testing yet.