Grow your team on GitHub
GitHub is home to over 28 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.Sign up
tools for working with genome variation graphs
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Distributed and cloud computing framework for vg
Contains dockerfiles that build the vgteam containers at our Dockerhub. Just add data!
displays multiple genomic sequences in the form of a tube map
Scripts for the haplotype-aware mapping paper project
vgteam Github page
A collection of c++ data structures I've coded up for various projects
efficient alignment of strings to partially ordered string graphs
C library for high-throughput sequencing data formats
utilities for indexing and sequence extraction from FASTA files
Redland Raptor RDF syntax library
Subset of Boost for vg dependencies
C++ function that implements a progress bar in console applications
succinct labeled graphs with collections and paths
C++ wrapper to tabix indexer
compressed protobuf streaming C++ headers library
SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
Succinct Data Structure Library 2.0
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
Contains scripts for generating variant graphs for a whole bunch of yeast strains. Pan-genomics in every sense of the word.
Dynamic succinct/compressed data structures