• tools for working with genome variation graphs

    C++ 374 98 8 issues need help Updated Oct 19, 2018
  • vcflib

    Forked from vcflib/vcflib

    a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

    C++ 139 MIT Updated Oct 18, 2018
  • Distributed and cloud computing framework for vg

    Python 3 5 Apache-2.0 1 issue needs help Updated Oct 9, 2018
  • Contains dockerfiles that build the vgteam containers at our Dockerhub. Just add data!

    Shell 2 2 MIT Updated Oct 9, 2018
  • displays multiple genomic sequences in the form of a tube map

    JavaScript 65 7 MIT Updated Oct 8, 2018
  • Scripts for the haplotype-aware mapping paper project

    Shell MIT Updated Oct 4, 2018
  • vgteam Github page

    HTML Updated Sep 21, 2018
  • A collection of c++ data structures I've coded up for various projects

    C++ 2 Apache-2.0 Updated Sep 17, 2018
  • efficient alignment of strings to partially ordered string graphs

    C 19 12 Updated Aug 21, 2018
  • Shell Apache-2.0 Updated Aug 13, 2018
  • C library for high-throughput sequencing data formats

    C 264 Updated Jul 26, 2018
  • utilities for indexing and sequence extraction from FASTA files

    C++ 21 MIT Updated Jun 5, 2018
  • raptor

    Forked from dajobe/raptor

    Redland Raptor RDF syntax library

    C 41 Updated Jun 1, 2018
  • Subset of Boost for vg dependencies

    C++ BSL-1.0 Updated Apr 11, 2018
  • C++ function that implements a progress bar in console applications

    C++ 7 MIT Updated Jan 16, 2018
  • C 70 Updated Nov 22, 2017
  • succinct labeled graphs with collections and paths

    C++ 13 9 MIT Updated Sep 13, 2017
  • tabixpp

    Forked from ekg/tabixpp

    C++ wrapper to tabix indexer

    C++ 14 MIT Updated Aug 1, 2017
  • compressed protobuf streaming C++ headers library

    C++ 6 4 MIT Updated Nov 10, 2016
  • SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.

    C++ 5 GPL-3.0 Updated Sep 21, 2016
  • Succinct Data Structure Library 2.0

    C++ 214 Updated Sep 2, 2016
  • A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

    C++ 1 11 MIT Updated Aug 14, 2016
  • Contains scripts for generating variant graphs for a whole bunch of yeast strains. Pan-genomics in every sense of the word.

    Jupyter Notebook Updated Apr 6, 2016
  • DYNAMIC

    Forked from xxsds/DYNAMIC

    Dynamic succinct/compressed data structures

    C++ 6 Updated Mar 18, 2016