vgteam

vg

tools for working with genome variation graphs

genomics graph dna variation-graph genome-graph

C++ 238 66 Updated Aug 9, 2017

toil-vg

Distributed and cloud computing framework for vg

Python 2 5 Updated Aug 7, 2017

sequenceTubeMap

displays multiple genomic sequences in form of a tube map

JavaScript 34 1 Updated Aug 6, 2017

xg

succinct labeled graphs with collections and paths

C++ 10 9 Updated Aug 5, 2017

gssw

efficient alignment of strings to partially ordered string graphs

C 17 8 Updated Aug 4, 2017

vg_docker

Contains dockerfiles that build the vgteam containers at our Dockerhub. Just add data!

Shell 2 2 Updated Aug 3, 2017

vcflib

Forked from vcflib/vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

C++ 118 Updated Aug 1, 2017

tabixpp

Forked from ekg/tabixpp

C++ wrapper to tabix indexer

C++ 14 Updated Aug 1, 2017

Complete-Striped-Smith-Waterman-Library

Forked from ekg/Complete-Striped-Smith-Waterman-Library

C 61 Updated Feb 14, 2017

stream

compressed protobuf streaming C++ headers library

C++ 2 4 Updated Nov 10, 2016

Superbubbles

Forked from Ritu-Kundu/Superbubbles

SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.

C++ 5 Updated Sep 21, 2016

sdsl-lite

Forked from simongog/sdsl-lite

Succinct Data Structure Library 2.0

C++ 170 Updated Sep 2, 2016

gfakluge

Forked from edawson/gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

C++ 1 4 Updated Aug 14, 2016

YeastGraphs

Contains scripts for generating variant graphs for a whole bunch of yeast strains. Pan-genomics in every sense of the word.

Jupyter Notebook Updated Apr 6, 2016

DYNAMIC

Forked from xxsds/DYNAMIC

Dynamic succinct/compressed data structures

C++ 3 Updated Mar 18, 2016

raptor

Forked from dajobe/raptor

Redland Raptor RDF syntax library

C 37 Updated Mar 14, 2016

People

mlin Mike Lin