Skip to content
Phylogenetic tree viewer based on D3.js
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
css
dist
fonts
img
js
libs
submissions
.gitignore
.htaccess
LICENSE.txt
README.md
dist.js
documentation.html
favicon.ico
fetch.php
index.html
package.json
phyd3.js
robots.txt
submit.php
view.php

README.md

License

phyD3, phylogenetic tree viewer based on D3.js http://phyd3.bits.vib.be Copyright (c) BITS VIB 2016

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or any later version.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
  • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
  • Neither the name of the VIB nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Full license text can be found in LICENSE.txt

Citation

When using PhyD3, please cite:

Kreft, L; Botzki, A; Coppens, F; Vandepoele, K; Van Bel, M

"PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization"

Bioinformatics (2017) PMID 28525531 doi:10.1093/bioinformatics/btx324.

Usage

$ cd phyd3/
$ npm install
$ node phyd3.js

Docs

https://phyd3.bits.vib.be/documentation.html

You can’t perform that action at this time.