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vidjil: release 2017.09
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@magiraud
magiraud committed Sep 8, 2017
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This changelog concerns the algorithmic part (C++) of Vidjil. This changelog concerns the algorithmic part (C++) of Vidjil.


2017-08-XX The Vidjil Team 2017-09-08 The Vidjil Team
* New BAM input parser, refactored input parsers (core/bioreader.cpp, core/bam.cpp) #2016 * New BAM input parser, refactored input parsers (core/bioreader.cpp, core/bam.cpp) #2016
* Streamlined seed options (-m, -k, -s), overriding -g presets (vidjil.cpp, core/germlines.cpp) #1673 #2156 * Streamlined seed options (-m, -k, -s), overriding -g presets (vidjil.cpp, core/germlines.cpp) #1673 #2156
* New and updated unit and functional tests #2016 #2552 * New and updated unit and functional tests #2016 #2552
* Faster tests (tests/Makefile, tests/*) #2254 * Faster tests (tests/Makefile, tests/*) #2254
* Bug closed (halting when a representative is too short) #2224 * Bug closed (halting when a representative is too short) #2224
* Documented dependencies and libraries (lib/info.txt) * Documented dependencies and libraries (lib/info.txt)
* Updated help, correcting -h documentation on -u/-uu/-uuu options
* Moved continuous integration to Gitlab CI (.gitlab-ci.yml)


2017-03-14 The Vidjil Team 2017-03-14 The Vidjil Team
* Better support for germlines from several species (germlines/*.g) #1987 #2132 * Better support for germlines from several species (germlines/*.g) #1987 #2132
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