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Commits on Jul 19, 2018
  1. Merge branch 'feature-a/release-gitlab-ci' into 'dev'

    magiraud committed Jul 19, 2018
    Gitlab-CI modifications for release (mainly)
    
    See merge request vidjil/vidjil!251
Commits on Jul 18, 2018
  1. doc/vidjil-algo, Makefile: revert a previous commit

    magiraud committed Jul 18, 2018
    This reverts c16ae8a.
    What was before was correct, it concerns `Makefile.algo`.
    Thanks to @mikael-s.
  2. Merge branch 'feature-a/3387-free-memory-when-objects-become-useless-…

    magiraud committed Jul 18, 2018
    …in-windows' into 'dev'
    
    feature-a/3387-free-memory-when-objects-become-useless-in-windows into dev
    
    Closes #3387
    
    See merge request vidjil/vidjil!253
Commits on Jul 17, 2018
  1. tests: update

    magiraud committed Jul 17, 2018
    The tests instantiated 67 Sequence objects... all of them with a NULL *seq.
  2. core/bioreader.hpp, core/fasta.cpp: remove Sequence.seq

    magiraud committed Jul 17, 2018
    Dead code, live memory.
    See #3389.
Commits on Jul 16, 2018
  1. vidjil-algo: release 2018.07

    magiraud committed Jul 16, 2018
  2. doc/tutorial: update links

    magiraud committed Jul 16, 2018
    See #3364.
  3. browser/index.html: update links

    magiraud committed Jul 16, 2018
    See #3364.
Commits on Jul 13, 2018
  1. tests: update

    magiraud committed Jul 13, 2018
  2. vidjil.cpp: help, update

    magiraud committed Jul 13, 2018
  3. tests: update

    magiraud committed Jul 13, 2018
  4. tests: update md5s

    magiraud committed Jul 13, 2018
  5. Merge branch 'feature-ag/3372-imgt-sequence-differences' into 'dev'

    magiraud committed Jul 13, 2018
    Use same sequences for all germlines
    
    Closes #3372 and #3373
    
    See merge request vidjil/vidjil!250
  6. germline/split-from-imgt.py: GENES_SEQ_FROM_NCBI, remembers on how to…

    magiraud committed Jul 13, 2018
    … get genes from the NCBI.
    
    Partially revert 806f218.
    See #2645.
  7. split-from-imgt.py: gap_j() is done during retrieve_gene()

    magiraud committed Jul 13, 2018
    We also want to be able to take sequences from NCBI and gap them. See #2645.
    Partially revert 806f218.
Commits on Jul 12, 2018
  1. Merge branch 'feature-a/3008-default_J_downstream' into 'dev'

    magiraud committed Jul 12, 2018
    Feature a/3008 default j downstream
    
    See merge request vidjil/vidjil!148
  2. Merge branch 'update-doc' into 'dev'

    magiraud committed Jul 12, 2018
    Update doc
    
    See merge request vidjil/vidjil!249
  3. tests: a probably bad 18nt deletion

    magiraud authored and mikael-s committed Jun 27, 2018
    See #3315.
  4. should-vdj-tests/BRI_TRB.should-vdj.fa: a JDJ recombination ?

    magiraud authored and mikael-s committed Apr 6, 2018
    See #3145 and #3146.
  5. tests: update

    magiraud authored and mikael-s committed Apr 5, 2018