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Commits on Oct 22, 2011
  1. v0.9.2:

     - Fixes bug where duple index was traversed in wrong direction
     - Rejiggering of how string length is penalized
    vincentchu committed Oct 22, 2011
Commits on Oct 20, 2011
  1. Minor revisions and bug fixes:

     - Bumped version to 0.9.1
     - Added VERSION constant
     - Fixed DupleIndexing that ignored certain types of strings
     - Made pre-matching a bit less sensitive to bring more candidates in
    vincentchu committed Oct 20, 2011
Commits on Oct 8, 2011
  1. Fixing janky tabbing

    vincentchu committed Oct 8, 2011
Commits on Oct 5, 2011
  1. Adding README.md

    vincentchu committed Oct 5, 2011
  2. Adding gemspec file

    vincentchu committed Oct 5, 2011
  3. Modifying placement of files to better conform with conventions for file

    locations on C extensions
    vincentchu committed Oct 5, 2011
  4. Removing unneeded duple_index.rb file

    vincentchu committed Oct 5, 2011
Commits on Oct 4, 2011
  1. Addin a shit ton of comments

    vincentchu committed Oct 4, 2011
  2. Changes to the searcher class:

     - Penalize longer strings even if they have a decent smith score. This
       favors shorter strings given identical smith-waterman scores
    vincentchu committed Oct 4, 2011
  3. Refactoring some of the C code for duple indices

    vincentchu committed Oct 4, 2011
  4. Getting rid of logging statements

    vincentchu committed Oct 4, 2011
  5. Removing unneeded query method and fixing some specs

    vincentchu committed Oct 4, 2011
  6. Moving the match phase completely into C

    vincentchu committed Oct 4, 2011
Commits on Sep 25, 2011
  1. Finishing searcher + spec

    vincentchu committed Sep 25, 2011
Commits on Sep 23, 2011
  1. Finishing decimate_strings! method

    vincentchu committed Sep 23, 2011
  2. Instantiating duple_index in searcher class

    vincentchu committed Sep 23, 2011
  3. Adding ruby methods for interpreting index results

    vincentchu committed Sep 23, 2011
Commits on Sep 21, 2011
  1. Cleanup of unneeded files

    vincentchu committed Sep 21, 2011
  2. Removing debug logging statements + global variables

    vincentchu committed Sep 21, 2011
  3. Adding free routine to DupleIndex

    vincentchu committed Sep 21, 2011
Commits on Sep 19, 2011
  1. Passing tests on DupleIndex querying

    vincentchu committed Sep 19, 2011
  2. Passing tests on DupleIndex querying

    vincentchu committed Sep 19, 2011
  3. Switching back to using non global variable

    vincentchu committed Sep 19, 2011
Commits on Sep 18, 2011
  1. Moving duples hash to global variable

    vincentchu committed Sep 18, 2011
  2. Random commit

    vincentchu committed Sep 18, 2011
Commits on Sep 17, 2011
  1. Adding in code to handle Adding strings to index

    vincentchu committed Sep 17, 2011
  2. Adding a lot of cray cray C code

    vincentchu committed Sep 17, 2011
Commits on Sep 15, 2011
  1. Finishing SmithWaterman class

    vincentchu committed Sep 15, 2011
  2. Adding base crap for SmithWaterman class

    vincentchu committed Sep 15, 2011
  3. Moving existing code into separate namespace

    vincentchu committed Sep 15, 2011
  4. Adding option to ignore certain characters

    vincentchu committed Sep 15, 2011
  5. Refactoring C code by adding a header file

    vincentchu committed Sep 15, 2011
Commits on Aug 22, 2011
  1. Adding a sample command-t function for demo purposes

    vincentchu committed Aug 22, 2011