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Neuro detect leverages the possibilities of deep learning to automatically detect and correct formatting errors of MRI scan data.
Utilities to interact with the SciTran API from the client side for search, get, put, and compute
Repository where we place special vistasoft functions that we compile for containers
A repository for vistalab docker files
VISTASOFT is the main software repository of the VISTA lab at Stanford University.
Normalize anatomicals to RAS and to acpc registering to MNI or providing AC-PC coordinates.
Flips bvec x, y, or z
Analyzing visual field coverage (field of view) in ventral occipital cortex. Emphasis on reading circuitry
The code to perform the ensemble tractography and reproduce the results in the publication (Takemura et al. in press). Under construction.
Routines for teaching MRI principles in Stanford's Psych 204A
Matlab tutorials for courses in reading, image science, and MR
Method for encoding brain connectomes in multidimensional arrays (tensors).
ITKGray Branch of ITKSnap Src
JSONio: a MATLAB JSON library
Matlab implementation of ConTrack_score
Includes source code for ConTrack, Quench, DTIQuery and other tools
Image quality for diffusion weighted imaging
Data Readers and Writers
Elastic Basis Pursuit
Read, modify and write DICOM files with python code
The bridge between MITK diffusion and vistasoft.
Reading and writing .pdb tractography files, in python
Models for diffusion data
label an ROI from an anatomical scan
MatLab routines for validating white-matter connectomes generated using diffusion-weighted imaging.
Resampling dwi directions