VISTASOFT is the main software repository of the VISTA lab at Stanford University.
Matlab C C++ HTML M Shell Other
Latest commit 17bb4c7 Sep 21, 2017 @francopestilli francopestilli committed on GitHub Trying support with a tricky back compatibility issue due to changes …
…to figure handles

ishandle is a function in 2014 so that should work

Jason D. Yeatman, PhD
Assistant Professor, Institute for Learning & Brain Sciences (I-LABS)
Department of Speech & Hearing Sciences
University of Washington
http://brainandeducation.com

On Wed, Sep 20, 2017 at 3:10 PM, Franco Pestilli <notifications@github.com>
wrote:

> But unfortunately, the current version of this function is incompatible
> with the current version of MatLab.
>
> Can ypu please test one of the following on your 2014b?
> ishandle(h1)
> isvalid(h1)
>
> Does any of these work for you?
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <#241 (comment)>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABsYyjy178xZXLPFzOVoBGt_We73YuHkks5skY1lgaJpZM4OE-bu>
Permalink
Failed to load latest commit information.
external All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
fileFilters Merge pull request #258 from vistalab/readFileNiftiFix Aug 18, 2017
local Changed configuration for ignoring local. Jun 30, 2016
mrAlign All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
mrAnatomy All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
mrBOLD updates to fix the 4th column of the transform matrix of inplane nift… Jul 25, 2017
mrDiffusion Trying support with a tricky back compatibility issue due to changes … Sep 21, 2017
mrMesh All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
mrQuant/relaxometry Changed readFileNifti => niftiRead in multiple locations. Aug 11, 2013
mrScripts variables <mn> and <sd> were used before being defined. that is now f… Sep 1, 2017
mrTest Merge pull request #252 from vistalab/waitbar Jul 25, 2017
mrViewer All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
qa A few more bad scans and updates to the qa method Dec 11, 2015
rdt Testing dtiInit Jul 21, 2016
setup Revert "Revert "Changes that will compile readFileNifti default to re… Jul 22, 2017
tutorials ensure tutorial runs even if user has not run previous ernie tutorials Jul 16, 2017
utilities All calls to waitbar have been replaced by mrvWaitbar. This is a new … Jul 22, 2017
.gitignore Comments mainly, though I added a small utility (wmCreate) to create … May 28, 2017
README.md Update README.md Apr 25, 2017
vistaRootPath.m Initial repository layout Jan 18, 2013

README.md

Vistasoft

VISTASOFT is the main software repository of the Vista lab at Stanford University. It contains Matlab code to perform a variety of analysis on MRI data, including functional MRI and diffusion MRI.

License

(c) Vista lab, Stanford University.

Unless otherwise noted, all our code is released under the GPL

Modules

Vistasoft contains the following modules:

  • mrAlign : Aligning functional and anatomical data
  • mrAnatomy: Handling anatomical MRI data.
  • mrBOLD : analysis of functional MRI data.
  • mrDiffusion : Diffusion MRI, including DTI and tractography.
  • mrMesh : displaying MR data on rendered 3D surface representations of the brain.
  • mrQuant : quantitative MRI (see also mrQ)
  • mrScripts : a variety of useful scripts

And in addition:

  • utilities
  • setup
  • tutorials
  • external: functions written by others that we use as dependencies (see optional packages).

External dependencies

Vistasoft depends on the following packages:

Optional Packages

Documentation

For detailed documentation, please visit the VISTA lab wiki.

Installation

To install Vistasoft:

  1. Clone the Vistasoft repository on your local machine; for example:

    > cd ~/matlab
    > git clone https://github.com/vistalab/vistasoft
    
  2. Start Matlab and Add the Vistasoft repository's base directory to your Matlab path:

    addpath(genpath('~/matlab/vistasoft'));

    Note that if you have installed additional Matlab packages (such as the RemoteDataToolbox), you will have to ensure that these packages are on your path as well.

For help with the new mrInit intialization method, please see the Initialization Page.