Vitessce is a visual integration tool for exploration of spatial single-cell experiments. To learn more about the features of Vitessce, please visit our core docs.
The vitessce Python package includes:
- Vitessce as a Jupyter Widget
- Use Vitessce directly within Jupyter Notebook or Jupyter Lab as an interactive widget
- View config API
- Create and edit Vitessce configurations using Python object-oriented syntax
- Data preparation
- Use our data conversion wrapper classes to process data stored in common single-cell file types including AnnData and SnapATAC.
Installation requires Python 3.9 or greater. Install from PyPI:
pip install vitessce[all]The Vitessce widget is compatible with the following interactive Python platforms:
- JupyterLab
>=3.0.0 - Jupyter Notebook (classic)
>=1.0.0
.. toctree:: :maxdepth: 2 :hidden: self widget_examples data_examples api_config api_data data_options widget_plugins screenshots