The effects of mutation and recombination rate heterogeneity on the inference of demography and the distribution of fitness effects

Vivak Soni, Susanne P. Pfeifer, and Jeffrey D. Jensen.

Contact: vsoni11@asu.edu

Repository contains scripts to run generate input files and run demographic and DFE inference on SLiM output, as per Soni et al. 2023 (https://academic.oup.com/gbe/article/16/2/evae004/7517031).

Scripts folder contains SLiM simulation scripts, as well as python scripts to generate input files for downstream inference. Jupyter scripts to reproduce plots are contained in scripts/plotting folder.

Mutation and recombination rate maps are contained in zip folders. Script to generate maps is included in scripts/variable rates.

Outputs from demographic and DFE inference are contained in .tar.gz files.