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Vivarium-COBRA

A vivarium wrapper process for the COBRApy library. COBRA_FBA can be loaded with BiGG models, and has been primarily used with BiGG model iAF1260b. The project includes CobraComposite, which adds auxiliary processes MassDeriver and VolumeDeriver to make a type of dynamic FBA. Other processes can constrain individual fluxes in COBRA_FBA through the flux_bounds port, allowing for a type of integrative FBA.

Installation

$ pip install -r requirements.txt

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A vivarium process wrapper for the COBRApy FBA library

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