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minor fix to numbering

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vdha committed May 2, 2018
1 parent a1c9603 commit fb8168c687bb8b5be46fda98dedc545a38b10b3d
Showing with 4 additions and 4 deletions.
  1. +4 −4 README.md
@@ -6,11 +6,11 @@
## Contents
This is a collection of _get started_ pages and introductory tutorials for computational methods routinely used within the group, followed by details on access to high-performance computing access within Monash, and links to bioinformatics beginners tutorials. Recommended prerequisites are listed at the top of that page. However, try as I might to make them so, there's no guarantee that each tutorial is entirely self-contained, but the idea is that you should be able to start anywhere.

0. ### Lab Admin
1. #### Lab Admin

- [data storage facilities](./content/data-storage-policy.md) - Data storage and archiving facilities available.

1. #### Theory and Software
2. #### Theory and Software
- [`Commonly used file formats`](./content/misc-file-formats.md) - Tutorial on commonly used file formats like `fasta`, `phy`, etc.
- [`Multiple sequence alignment - introduction`](./content/alignment1-introduction.md) - How to do multiple sequence alignment, part 1
- [`Multiple sequence alignment using MAFFT`](./content/alignment2-mafft.md) - How to do multiple sequence alignment (using `mafft`), part 2
@@ -21,14 +21,14 @@ This is a collection of _get started_ pages and introductory tutorials for compu
- [`RAxML`](./content/software-raxml.md) - How to install RAXML, and basic usage.
- [Selection analysis with `HyPhy`](./content/selection-hyphy.md) - quickstart tutorial.

2. #### Using high-performance computers
3. #### Using high-performance computers

- [`hpc-resources`](./content/hpc-resources.md) - A quick overview of the HPC and data-serving resources available, and basic usage policies.
- [`about-our-hpc`](./content/about-our-hpc.md) - How to use the lab's internal server, located in room 217
- [`m3-quickstart`](./content/m3-quickstart.md) - A tutorial on how to send a job to M3.
- [`m3-tips-and-tricks`](./content/m3-tips-and-tricks.md) - A dumping ground for how to use M3 slightly more efficiently.

3. #### Tech Tips
4. #### Tech Tips
- [`Software installation and prep work`](./content/things.md) - Software we used, and some basics to read up on.
- [`Data wrangling with python`](./content/Tutorial%20-%20Pandas.ipynb) - Data wrangling with python, using the `pandas` library.
- [`R-ggtree-demo`](./content/R-ggtree_demo.pdf) - How to plot some basic trees with `ggtree`, in R. This PDF document should be viewable in your browser, but doesn't always; you can download it to view it if required.

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