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Upgraded bedtools, bowtie, bowtie2, bwa, and picard recipes.

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1 parent 756dfa3 commit 469d88a974fad2a08beccc188edf2f1b572ddcde @mmarchin mmarchin committed Aug 22, 2012
Showing with 5 additions and 5 deletions.
  1. +1 −1 recipes/bedtools.sh
  2. +1 −1 recipes/bowtie.sh
  3. +1 −1 recipes/bowtie2.sh
  4. +1 −1 recipes/bwa.sh
  5. +1 −1 recipes/picard.sh
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@@ -1,4 +1,4 @@
-local version="2.15.0"
+local version="2.16.2"
local type="tar.gz"
local URL="http://bedtools.googlecode.com/files/BEDTools.v${version}.${type}"
local tb_file=`basename $URL`
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@@ -1,4 +1,4 @@
-local version="0.12.7"
+local version="0.12.8"
local type="zip"
local URL="http://downloads.sourceforge.net/project/bowtie-bio/bowtie/${version}/bowtie-${version}-src.${type}"
local tb_file=`basename $URL`
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@@ -1,4 +1,4 @@
-local version="2.0.0-beta5"
+local version="2.0.0-beta7"
local type="zip"
local URL="http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/${version}/bowtie2-${version}-linux-x86_64.${type}"
local tb_file=`basename $URL`
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@@ -1,5 +1,5 @@
-local version="0.6.0"
+local version="0.6.2"
local type="tar.bz2"
local seed_name="bwa_${version}"
local URL="http://sourceforge.net/projects/bio-bwa/files/bwa-${version}.${type}"
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@@ -1,5 +1,5 @@
-local version="1.66"
+local version="1.75"
local type="zip"
local tb_file="picard-tools-${version}.${type}"
local URL="http://sourceforge.net/projects/picard/files/picard-tools/${version}/${tb_file}"

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