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In the quest for removing code and eventually the special handling of the e2e/systemdlogs plugins, I had to start untangling some of the different configuration management. It was always more complex than desired but we never had enough of a reason to spend the time and untangle it. We have that motivation now since in order to remove those plugins from the core I have to wire up numerous types and flags differently which impacts all of the other config 'resolution' code. In this PR, I took the 4 fields from the genFlags type which were duplicated in the config (it had a config itself as well as these four fields for convenience setting from the cmdline). Now it properly merges the different flags/configs appropriately regardless where they are set. Signed-off-by: John Schnake <jschnake@vmware.com>
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