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@vpc-ccg

Hach Lab for Computational Cancer Genomics

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  1. freddie Public

    Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

    Python 5 3

  2. haslr Public

    A fast tool for hybrid genome assembly of long and short reads

    C++ 63 9

  3. lordfast Public

    Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

    C 36 3

  4. calib Public

    Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

    HTML 26 8

  5. svict Public

    Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA

    C++ 18 5

  6. A sensitive and fast tool for circular RNA detection from RNA-Seq data

    C++ 6 4

Repositories

  • freddie Public

    Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

    Python 5 MIT 3 3 0 Updated Oct 18, 2021
  • calib Public

    Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

    HTML 26 MIT 8 2 0 Updated Oct 15, 2021
  • LTR-sim Public

    Long transcriptomic reads simulator

    Python 0 MIT 0 0 0 Updated Sep 13, 2021
  • circminer Public

    A sensitive and fast tool for circular RNA detection from RNA-Seq data

    C++ 6 GPL-3.0 4 2 0 Updated May 4, 2021
  • C++ 1 MIT 0 0 0 Updated Mar 24, 2021
  • pamir Public

    Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

    C++ 7 BSD-3-Clause 4 6 1 Updated Mar 22, 2021
  • sedef Public

    Identification of segmental duplications in the genome

    C++ 23 MIT 8 3 0 Updated Sep 2, 2020
  • C++ 0 MIT 0 0 0 Updated Apr 24, 2020
  • haslr Public

    A fast tool for hybrid genome assembly of long and short reads

    C++ 63 GPL-3.0 9 25 0 Updated Apr 22, 2020
  • lordfast Public

    Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

    C 36 GPL-3.0 3 7 0 Updated Jul 15, 2019

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