[M::mm_idx_gen::45.606*1.73] collected minimizers
[M::mm_idx_gen::47.421*2.40] sorted minimizers
[M::main::47.421*2.40] loaded/built the index for 1491208 target sequence(s)
[M::mm_mapopt_update::48.840*2.36] mid_occ = 292
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1491208
[M::mm_idx_stat::49.747*2.33] distinct minimizers: 97465559 (40.10% are singletons); average occurrences: 4.428; average spacing: 5.397
[M::worker_pipeline::69.813*9.55] mapped 11376 sequences
[M::worker_pipeline::83.652*12.93] mapped 11419 sequences
[M::worker_pipeline::99.312*15.61] mapped 11501 sequences
[M::worker_pipeline::114.484*17.47] mapped 11399 sequences
[M::worker_pipeline::130.601*19.02] mapped 11443 sequences
[M::worker_pipeline::145.168*20.10] mapped 11318 sequences
[M::worker_pipeline::160.682*21.04] mapped 11261 sequences
[M::worker_pipeline::175.407*21.79] mapped 11347 sequences
[M::worker_pipeline::190.698*22.44] mapped 11451 sequences
[M::worker_pipeline::205.269*22.99] mapped 11409 sequences
[M::worker_pipeline::222.053*23.47] mapped 11432 sequences
[M::worker_pipeline::236.741*23.87] mapped 11445 sequences
[M::worker_pipeline::252.558*24.25] mapped 11509 sequences
[M::worker_pipeline::266.833*24.56] mapped 11406 sequences
[M::worker_pipeline::282.161*24.85] mapped 11482 sequences
[M::worker_pipeline::296.946*25.10] mapped 11409 sequences
[M::worker_pipeline::311.987*25.33] mapped 11369 sequences
[M::worker_pipeline::327.208*25.55] mapped 11368 sequences
[M::worker_pipeline::343.003*25.76] mapped 11347 sequences
[M::worker_pipeline::357.906*25.93] mapped 11430 sequences
[M::worker_pipeline::373.599*26.10] mapped 11454 sequences
[M::worker_pipeline::388.683*26.25] mapped 11407 sequences
[M::worker_pipeline::404.106*26.39] mapped 11408 sequences
[M::worker_pipeline::418.496*26.52] mapped 11370 sequences
[M::worker_pipeline::434.838*26.64] mapped 11381 sequences
[M::worker_pipeline::450.378*26.76] mapped 11395 sequences
[M::worker_pipeline::464.460*26.86] mapped 11462 sequences
[M::worker_pipeline::480.683*26.96] mapped 11349 sequences
[M::worker_pipeline::495.529*27.05] mapped 11419 sequences
[M::worker_pipeline::510.619*27.14] mapped 11439 sequences
[M::worker_pipeline::526.312*27.21] mapped 11431 sequences
[M::worker_pipeline::541.247*27.28] mapped 11407 sequences
[M::worker_pipeline::557.052*27.35] mapped 11386 sequences
[M::worker_pipeline::573.028*27.43] mapped 11396 sequences
[M::worker_pipeline::587.904*27.49] mapped 11463 sequences
[M::worker_pipeline::604.447*27.53] mapped 11521 sequences
[M::worker_pipeline::619.462*27.59] mapped 11413 sequences
[M::worker_pipeline::634.237*27.64] mapped 11458 sequences
[M::worker_pipeline::649.598*27.70] mapped 11317 sequences
[M::worker_pipeline::664.872*27.75] mapped 11347 sequences
[M::worker_pipeline::679.893*27.80] mapped 11334 sequences
[M::worker_pipeline::695.962*27.85] mapped 11339 sequences
[M::worker_pipeline::710.674*27.89] mapped 11350 sequences
[M::worker_pipeline::725.671*27.93] mapped 11473 sequences
[M::worker_pipeline::740.872*27.98] mapped 11432 sequences
[M::worker_pipeline::755.845*28.01] mapped 11340 sequences
[M::worker_pipeline::771.656*28.05] mapped 11322 sequences
[M::worker_pipeline::786.504*28.09] mapped 11392 sequences
[M::worker_pipeline::802.625*28.13] mapped 11352 sequences
[M::worker_pipeline::817.649*28.16] mapped 11427 sequences
[M::worker_pipeline::832.661*28.20] mapped 11327 sequences
[M::worker_pipeline::848.049*28.21] mapped 11389 sequences
[M::worker_pipeline::863.429*28.24] mapped 11355 sequences
[M::worker_pipeline::879.261*28.28] mapped 11408 sequences
[M::worker_pipeline::894.216*28.31] mapped 11344 sequences
[M::worker_pipeline::909.218*28.33] mapped 11444 sequences
[M::worker_pipeline::924.999*28.36] mapped 11392 sequences
[M::worker_pipeline::940.067*28.39] mapped 11410 sequences
[M::worker_pipeline::954.557*28.41] mapped 11460 sequences
[M::worker_pipeline::970.614*28.41] mapped 11328 sequences
[M::worker_pipeline::985.764*28.43] mapped 11367 sequences
[M::worker_pipeline::1000.905*28.46] mapped 11375 sequences
[M::worker_pipeline::1015.849*28.48] mapped 11431 sequences
[M::worker_pipeline::1030.985*28.50] mapped 11365 sequences
[M::worker_pipeline::1046.481*28.52] mapped 11375 sequences
[M::worker_pipeline::1061.817*28.54] mapped 11398 sequences
[M::worker_pipeline::1076.311*28.56] mapped 11391 sequences
[M::worker_pipeline::1091.640*28.57] mapped 11360 sequences
[M::worker_pipeline::1106.562*28.59] mapped 11365 sequences
[M::worker_pipeline::1121.340*28.61] mapped 11448 sequences
[M::worker_pipeline::1137.325*28.63] mapped 11409 sequences
[M::worker_pipeline::1152.489*28.65] mapped 11393 sequences
[M::worker_pipeline::1166.714*28.66] mapped 11330 sequences
[M::worker_pipeline::1183.690*28.65] mapped 11409 sequences
[M::worker_pipeline::1198.305*28.66] mapped 11410 sequences
[M::worker_pipeline::1214.104*28.68] mapped 11460 sequences
[M::worker_pipeline::1228.742*28.68] mapped 11462 sequences
[M::worker_pipeline::1244.281*28.70] mapped 11370 sequences
[M::worker_pipeline::1258.695*28.72] mapped 11300 sequences
[M::worker_pipeline::1273.698*28.73] mapped 11365 sequences
[M::worker_pipeline::1288.988*28.74] mapped 11427 sequences
[M::worker_pipeline::1304.769*28.75] mapped 11406 sequences
[M::worker_pipeline::1319.317*28.76] mapped 11492 sequences
[M::worker_pipeline::1334.324*28.78] mapped 11352 sequences
[M::worker_pipeline::1349.667*28.79] mapped 11533 sequences
[M::worker_pipeline::1364.651*28.80] mapped 11372 sequences
[M::worker_pipeline::1379.406*28.81] mapped 11368 sequences
[M::worker_pipeline::1394.717*28.82] mapped 11436 sequences
[M::worker_pipeline::1409.933*28.83] mapped 11355 sequences
[M::worker_pipeline::1425.304*28.84] mapped 11470 sequences
[M::worker_pipeline::1439.666*28.85] mapped 11324 sequences
[M::worker_pipeline::1454.646*28.86] mapped 11397 sequences
[M::worker_pipeline::1469.955*28.88] mapped 13224 sequences
[M::worker_pipeline::1483.872*28.89] mapped 14216 sequences
[M::worker_pipeline::1498.855*28.90] mapped 14227 sequences
[M::worker_pipeline::1513.002*28.91] mapped 14216 sequences
[M::worker_pipeline::1527.694*28.92] mapped 14226 sequences
[M::worker_pipeline::1542.535*28.93] mapped 14219 sequences
[M::worker_pipeline::1556.882*28.94] mapped 14262 sequences
[M::worker_pipeline::1572.000*28.95] mapped 14214 sequences
[M::worker_pipeline::1586.214*28.96] mapped 14231 sequences
[M::worker_pipeline::1601.341*28.96] mapped 14228 sequences
[M::worker_pipeline::1615.762*28.97] mapped 14188 sequences
[M::worker_pipeline::1630.863*28.98] mapped 14247 sequences
[M::worker_pipeline::1645.223*28.99] mapped 14227 sequences
[M::worker_pipeline::1660.043*29.00] mapped 14198 sequences
[M::worker_pipeline::1674.725*29.01] mapped 14234 sequences
[M::worker_pipeline::1689.108*29.02] mapped 14268 sequences
[M::worker_pipeline::1704.142*29.03] mapped 14210 sequences
[M::worker_pipeline::1718.919*29.03] mapped 14202 sequences
[M::worker_pipeline::1733.488*29.04] mapped 14225 sequences
[M::worker_pipeline::1747.895*29.05] mapped 14189 sequences
[M::worker_pipeline::1763.155*29.06] mapped 14226 sequences
[M::worker_pipeline::1778.957*29.06] mapped 14190 sequences
[M::worker_pipeline::1794.422*29.07] mapped 14258 sequences
[M::worker_pipeline::1808.970*29.08] mapped 14238 sequences
[M::worker_pipeline::1823.795*29.09] mapped 14221 sequences
[M::worker_pipeline::1838.515*29.09] mapped 14202 sequences
[M::worker_pipeline::1852.901*29.10] mapped 14225 sequences
[M::worker_pipeline::1867.878*29.11] mapped 14211 sequences
[M::worker_pipeline::1882.573*29.12] mapped 14197 sequences
[M::worker_pipeline::1897.114*29.12] mapped 14233 sequences
[M::worker_pipeline::1911.704*29.13] mapped 14221 sequences
[M::worker_pipeline::1926.066*29.14] mapped 14243 sequences
[M::worker_pipeline::1940.641*29.15] mapped 14233 sequences
[M::worker_pipeline::1955.372*29.15] mapped 14211 sequences
[M::worker_pipeline::1969.564*29.16] mapped 14227 sequences
[M::worker_pipeline::1984.433*29.16] mapped 14260 sequences
[M::worker_pipeline::1998.856*29.17] mapped 14257 sequences
[M::worker_pipeline::2012.795*29.18] mapped 14189 sequences
[M::worker_pipeline::2027.748*29.18] mapped 14244 sequences
[M::worker_pipeline::2041.979*29.19] mapped 14271 sequences
[M::worker_pipeline::2056.503*29.19] mapped 14249 sequences
[M::worker_pipeline::2071.514*29.20] mapped 14259 sequences
[M::worker_pipeline::2085.358*29.20] mapped 14268 sequences
[M::worker_pipeline::2100.068*29.21] mapped 14238 sequences
[M::worker_pipeline::2114.221*29.22] mapped 14244 sequences
[M::worker_pipeline::2128.603*29.22] mapped 14243 sequences
[M::worker_pipeline::2143.311*29.23] mapped 14234 sequences
[M::worker_pipeline::2157.294*29.23] mapped 14207 sequences
[M::worker_pipeline::2171.659*29.24] mapped 14205 sequences
[M::worker_pipeline::2186.784*29.24] mapped 14249 sequences
[M::worker_pipeline::2200.865*29.25] mapped 14275 sequences
[M::worker_pipeline::2215.477*29.25] mapped 14226 sequences
[M::worker_pipeline::2229.635*29.26] mapped 14256 sequences
[M::worker_pipeline::2244.884*29.26] mapped 14201 sequences
[M::worker_pipeline::2259.464*29.27] mapped 14309 sequences
[M::worker_pipeline::2274.055*29.27] mapped 14251 sequences
[M::worker_pipeline::2288.371*29.28] mapped 14229 sequences
[M::worker_pipeline::2302.869*29.28] mapped 14210 sequences
[M::worker_pipeline::2317.892*29.29] mapped 14246 sequences
[M::worker_pipeline::2331.814*29.29] mapped 14230 sequences
[M::worker_pipeline::2346.702*29.30] mapped 14234 sequences
[M::worker_pipeline::2360.128*29.30] mapped 14211 sequences
[M::worker_pipeline::2374.318*29.29] mapped 14124 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: /home/ubuntu/backup_data/anaconda3/haslr/bin/minimap2 -t 30 --secondary=no -c -k15 /home/ubuntu/USER/lizhichao/Assembly/outdir2/haslr_out/T740_ONT60/sr_k49_a3.contigs.nooverlap.250.fa /home/ubuntu/USER/lizhichao/Assembly/outdir2/haslr_out/T740_ONT60/lr25x.fasta
[M::main] Real time: 2375.037 sec; CPU: 69550.997 sec; Peak RSS: 19.297 GB