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Commits on Jul 13, 2016
Commits on Nov 22, 2015
  1. Merge pull request #103 from chrispbradley/master

    Fixing up some missed examples.
    chrispbradley committed Nov 22, 2015
Commits on Nov 18, 2015
  1. Merge pull request #104 from OpenCMISS/daniel_updates

    Preparation for example migration
    chrispbradley committed Nov 18, 2015
Commits on Nov 16, 2015
  1. removed unnecessary files

    rondiplomatico committed Nov 16, 2015
  2. Merge remote-tracking branch 'origin/master'

    Had a lot of conflicts as minor changes were made by me (#NOMPIMOD preproc directives) and others (renamings)
    
    Conflicts:
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/100k/src/100kExample.f90
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/10k/src/10kExample.f90
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/1k/src/1kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/100k/src/100kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/10k/src/10kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/1k/src/1kExample.f90
    	Bioelectrics/Bidomain/src/BidomainExample.f90
    	Bioelectrics/Monodomain/Fortran/src/FortranExample.f90
    	Bioelectrics/MonodomainBuenoOrovio/src/MonodomainBuenoOrovioExample.f90
    	Bioelectrics/MonodomainCUDA/src/MonodomainCUDAExample.f90
    	Bioelectrics/MonodomainTP06/src/MonodomainTP06Example.f90
    	Bioelectrics/Monodomain_Shiqiang/src/Monodomain_ShiqiangExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO/src/AdvectionDiffusionIOExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO_ALE/src/AdvectionDiffusionIO_ALEExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO_BCs/src/AdvectionDiffusionIO_BCsExample.f90
    	ClassicalField/AdvectionDiffusion/StaticAdvectionDiffusion/src/StaticAdvectionDiffusionExample.f90
    	ClassicalField/AdvectionDiffusion/StaticAdvectionDiffusionSUPG/src/StaticAdvectionDiffusionSUPGExample.f90
    	ClassicalField/Diffusion/CubicConvergenceTest/src/CubicConvergenceTestExample.f90
    	ClassicalField/Diffusion/Diffusion/src/DiffusionExample.f90
    	ClassicalField/Diffusion/DiffusionConstantSource/src/DiffusionConstantSourceExample.f90
    	ClassicalField/Diffusion/DiffusionIO_ALE/src/DiffusionIO_ALEExample.f90
    	ClassicalField/Diffusion/DiffusionLinearSource/src/DiffusionLinearSourceExample.f90
    	ClassicalField/Diffusion/LinearConvergenceTest/src/LinearConvergenceTestExample.f90
    	ClassicalField/Diffusion/QuadraticConvergenceTest/src/QuadraticConvergenceTestExample.f90
    	ClassicalField/Helmholtz/AnalyticHelmholtz/src/AnalyticHelmholtzExample.f90
    	ClassicalField/Helmholtz/Helmholtz/src/HelmholtzExample.f90
    	ClassicalField/Laplace/AnalyticLaplace/src/AnalyticLaplaceExample.f90
    	ClassicalField/Laplace/Embedded1DLaplace/src/Embedded1DLaplaceExample.f90
    	ClassicalField/Laplace/Embedded2DLaplace/src/Embedded2DLaplaceExample.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_2D_testproblem.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_3D_testproblem.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_3D_tests.f90
    	ClassicalField/Laplace/Laplace/Fortran/src/FortranExample.f90
    	ClassicalField/Laplace/LaplaceEllipsoid/src/LaplaceEllipsoidExample.f90
    	ClassicalField/Laplace/LaplaceEllipsoid_FieldML/src/LaplaceEllipsoid_FieldMLExample.f90
    	ClassicalField/Laplace/NumberLaplace/src/NumberLaplaceExample.f90
    	ClassicalField/Poisson/AnalyticNonlinearPoisson/src/AnalyticNonlinearPoissonExample.f90
    	ClassicalField/Poisson/ExtracellularBidomain/Fortran/src/FortranExample.f90
    	ClassicalField/Poisson/NonlinearPoisson/src/NonlinearPoissonExample.f90
    	ClassicalField/ReactionDiffusion/CellMLSplitReactionDiffusion1D/src/CellMLSplitReactionDiffusion1DExample.f90
    	ClassicalField/ReactionDiffusion/ReactionDiffusionConstantSource1D/src/ReactionDiffusionConstantSource1DExample.f90
    	ClassicalField/ReactionDiffusion/ReactionDiffusionNoSource1D/src/ReactionDiffusionNoSource1DExample.f90
    	DataAssimilation/DataAssimilationInflationGuccione/src/DataAssimilationInflationGuccioneExample.f90
    	DataAssimilation/DataAssimilationUniExtension/src/UniAxialExtensionExample.f90
    	DataProjection/1DRectangularCartesian/src/1DRectangularCartesianExample.f90
    	DataProjection/2DRectangularCartesian/src/2DRectangularCartesianExample.f90
    	DataProjection/3DRectangularCartesian/src/3DRectangularCartesianExample.f90
    	EmbeddedMesh/EmbeddedMeshBasic/src/EmbeddedMeshBasicExample.f90
    	EmbeddedMesh/EmbeddedMeshBasicWithMap/src/EmbeddedMeshBasicWithMapExample.f90
    	FiniteElasticity/ActiveContraction/src/ActiveContractionExample.f90
    	FiniteElasticity/Cantilever/Fortran/src/FortranExample.f90
    	FiniteElasticity/CuboidGeneric/src/CuboidGenericExample.f90
    	FiniteElasticity/CylinderInflation/src/CylinderInflationExample.f90
    	FiniteElasticity/LargeUniAxialExtension/Fortran/src/FortranExample.f90
    	FiniteElasticity/Membrane/MembraneExtension2DSpace/src/MembraneExtension2DSpaceExample.f90
    	FiniteElasticity/Membrane/MembraneExtension3DSpaceFlat/src/MembraneExtension3DSpaceFlatExample.f90
    	FiniteElasticity/Membrane/MembraneExtension3DSpaceTilted/src/MembraneExtension3DSpaceTiltedExample.f90
    	FiniteElasticity/MixedBoundaryConditions/src/MixedBoundaryConditionsExample.f90
    	FiniteElasticity/MooneyRivlinInCellML/src/MooneyRivlinInCellMLExample.f90
    	FiniteElasticity/QuadraticEllipsoid/src/QuadraticEllipsoidExample.f90
    	FiniteElasticity/QuadraticEllipsoidCosta/src/QuadraticEllipsoidCostaExample.f90
    	FiniteElasticity/QuadraticEllipsoidCostaReadIn/src/QuadraticEllipsoidCostaReadInExample.f90
    	FiniteElasticity/RightBiceps/Fortran/src/FortranExample.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample_incomp.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample_nearly.f90
    	FiniteElasticity/SimplexElements/LargeQuadraticTet/src/LargeQuadraticTetExample.f90
    	FiniteElasticity/SimplexElements/LinearTet/src/LinearTetExample.f90
    	FiniteElasticity/SimplexElements/QuadraticTet/src/QuadraticTetExample.f90
    	FiniteElasticity/TriCubicAxialExtension/src/TriCubicAxialExtensionExample.f90
    	FiniteElasticity/TriQuadraticCube/src/TriQuadraticCubeExample.f90
    	FiniteElasticity/UniAxialExtension/Fortran/src/FortranExample.f90
    	FiniteElasticity/UniAxialExtensionCompressible/src/UniAxialExtensionCompressibleExample.f90
    	FiniteElasticity/UniAxialExtensionLoadIncrements/src/UniAxialExtensionLoadIncrementsExample.f90
    	FiniteElasticity/UniAxialExtensionOrthotropic/src/UniAxialExtensionOrthotropicExample.f90
    	FiniteElasticity/testingPoints/src/testingPointsExample.f90
    	FluidMechanics/Burgers/Burgers/src/BurgersExample.f90
    	FluidMechanics/Burgers/GeneralisedBurgers/src/GeneralisedBurgersExample.f90
    	FluidMechanics/Burgers/StaticBurgers/src/StaticBurgersExample.f90
    	FluidMechanics/Darcy/Analytic/src/AnalyticExample.f90
    	FluidMechanics/Darcy/Dynamic/src/DynamicExample.f90
    	FluidMechanics/Darcy/Static/src/StaticExample.f90
    	FluidMechanics/Darcy/temp_memory_issue/src/temp_memory_issueExample.f90
    	FluidMechanics/NavierStokes/42Master/src/42MasterExample.f90
    	FluidMechanics/NavierStokes/Poiseuille/2DChannel/Static/src/StaticExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/Dynamic/src/DynamicExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/ParallelDynamic/src/ParallelDynamicExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/ParallelStatic/src/ParallelStaticExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/Static/src/StaticExample.f90
    	FluidMechanics/NavierStokes/Static_FieldML/src/Static_FieldMLExample.f90
    	FluidMechanics/NavierStokes/SupgChannel/src/SupgChannelExample.f90
    	FluidMechanics/NavierStokes/temp_tests/DynamicTest_theta_0.5/src/DynamicTest_theta_0.5Example.f90
    	FluidMechanics/NavierStokes/temp_tests/DynamicTest_theta_1.0/src/DynamicTest_theta_1.0Example.f90
    	FluidMechanics/Poiseuille/Static/src/StaticExample.f90
    	FluidMechanics/SCRATCH/DynamicNavierStokesInParallel/src/DynamicNavierStokesInParallelExample.f90
    	FluidMechanics/Stokes/42Master/src/42MasterExample.f90
    	FluidMechanics/Stokes/RoutineCheck/Dynamic/src/DynamicExample.f90
    	FluidMechanics/Stokes/RoutineCheck/Static/src/StaticExample.f90
    	InterfaceExamples/CoupledFluidSolid/Fortran/src/FortranExample.f90
    	InterfaceExamples/UnCoupledLaplace/src/UnCoupledLaplaceExample.f90
    	LagrangeSimplexMesh/src/LagrangeSimplexMeshExample.f90
    	LinearElasticity/2DExtensionPlaneStressLagrangeBasis/src/2DExtensionPlaneStressLagrangeBasisExample.f90
    	LinearElasticity/3DExtensionHermiteBasis/src/3DExtensionHermiteBasisExample.f90
    	LinearElasticity/3DExtensionLagrangeBasis/src/3DExtensionLagrangeBasisExample.f90
    	LinearElasticity/Analytic/CantileverBeam/src/CantileverBeamExample.f90
    	LinearElasticity/Analytic/Extension/src/ExtensionExample.f90
    	Meshes/1DCubicHermite/src/1DCubicHermiteExample.f90
    	Meshes/MoreComplexMesh/src/MoreComplexMeshExample.f90
    	Meshes/MultipleMeshComponents/src/MultipleMeshComponentsExample.f90
    	Meshes/Simplex/Tetrahedral/Cubic/src/CubicExample.f90
    	Meshes/Simplex/Tetrahedral/Linear/src/LinearExample.f90
    	Meshes/Simplex/Tetrahedral/Quadratic/src/QuadraticExample.f90
    	Meshes/Simplex/Triangular/Cubic/src/CubicExample.f90
    	Meshes/Simplex/Triangular/Linear/src/LinearExample.f90
    	Meshes/Simplex/Triangular/Quadratic/src/QuadraticExample.f90
    	Meshes/Versions3DLaplace/src/Versions3DLaplaceExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/simple_geometry/src/simple_geometryExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/titin_10/src/titin_10Example.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/while_loop/src/while_loopExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticitySameMesh/src/GudunovMonodomainElasticitySameMeshExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/CylinderInflationDrivenDarcy/src/CylinderInflationDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/CylinderInflationDrivenMultiCompDarcy/src/CylinderInflationDrivenMultiCompDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/IncompressibleElasticityDrivenDarcy/src/IncompressibleElasticityDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/QuadraticEllipsoidDrivenDarcy/src/QuadraticEllipsoidDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/QuadraticEllipsoidDrivenMultiCompDarcy/src/QuadraticEllipsoidDrivenMultiCompDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityFluidPressure/Cantilever/src/CantileverExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityFluidPressure/StaticExtension/src/StaticExtensionExample.f90
    	TwoRegions/src/TwoRegionsExample.f90
    	cellml/Fortran/src/FortranExample.f90
    	cellml/model-integration/Fortran/src/FortranExample.f90
    	define-geometry-and-export/src/define-geometry-and-exportExample.f90
    	simple-field-manipulation-direct-access/src/simple-field-manipulation-direct-accessExample.f90
    rondiplomatico committed Nov 16, 2015
Commits on Oct 13, 2015
  1. Merge pull request #102 from chrispbradley/master

    Rename and API change for eqs and problem specification.
    chrispbradley committed Oct 13, 2015
  2. Fix merge conflicts

    chrispbradley committed Oct 13, 2015
  3. Rename plus new API etc.

    chrispbradley committed Oct 13, 2015
Commits on Oct 6, 2015
  1. Rename and other changes

    chrispbradley committed Oct 6, 2015
Commits on Oct 2, 2015
Commits on Sep 20, 2015
  1. Merge pull request #101 from chrispbradley/fegrowth

    Adding Finite Elasticity Growth examples.
    chrispbradley committed Sep 20, 2015
  2. fixes

    chrispbradley committed Sep 20, 2015
  3. Adding growth example

    chrispbradley committed Sep 20, 2015
Commits on Sep 19, 2015
Commits on Sep 16, 2015
  1. replaced direct "USE MPI" calls by preprocessor defs to prepare for b…

    …uilds where mpi does not have a (compatible) module file.
    rondiplomatico committed Sep 16, 2015
Commits on Sep 1, 2015
  1. Merge pull request #99 from dladd/LDC_reduce

    Reduce size of nightly test for LDC; bugfixes for 1D0D example
    chrispbradley committed Sep 1, 2015
Commits on Aug 18, 2015
  1. fixes for 1D0D Reymond validation example: turn off gravity, fix issu…

    …es with time scale and reference areas, improve result analysis script
    dladd committed Aug 18, 2015
Commits on Aug 17, 2015
  1. Merge pull request #98 from el-tomo/master

    right biceps active contraction example
    chrispbradley committed Aug 17, 2015
Commits on Aug 7, 2015
  1. clean up

    el-tomo committed Aug 7, 2015
Commits on Aug 6, 2015
Commits on Aug 3, 2015
  1. Merge pull request #97 from tyu011/master

    Fixed the problem with wrong fails shown in parent node and invalid l…
    chrispbradley committed Aug 3, 2015
Commits on Jul 31, 2015
Commits on Jul 30, 2015
  1. reduce the size of the Navier-Stokes lid-driven cavity example so tha…

    …t the debug nightly test should take ~20 minutes.
    dladd committed Jul 30, 2015
Commits on Jul 27, 2015
  1. Merge pull request #95 from el-tomo/master

    changed the way the Dirichlet BCs are updated according to code review
    chrispbradley committed Jul 27, 2015
Commits on Jul 24, 2015
  1. Merge pull request #96 from tyu011/master

    Add the path to the example construction to fix the leaf example exec…
    chrispbradley committed Jul 24, 2015
Commits on Jul 23, 2015
  1. clean up

    el-tomo committed Jul 23, 2015