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Package: qrqc
Version: 1.10.1
Date: 2012-02-20
Title: Quick Read Quality Control
Author: Vince Buffalo
Maintainer: Vince Buffalo <vsbuffalo@ucdavis.edu>
Imports: reshape, ggplot2, Biostrings, biovizBase, graphics, methods, plyr, stats
Depends: reshape, ggplot2, Biostrings, biovizBase, brew, xtable, Rsamtools (>= 1.3.28), testthat
LinkingTo: Rsamtools
Description: Quickly scans reads and gathers statistics on base and quality
frequencies, read length, k-mers by position, and frequent sequences. Produces
graphical output of statistics for use in quality control pipelines, and an
optional HTML quality report. S4 SequenceSummary objects allow specific tests
and functionality to be written around the data collected.
License: GPL (>=2)
URL: http://github.com/vsbuffalo/qrqc
biocViews: Sequencing, QualityControl, DataImport, Preprocessing, Visualization, HighThroughputSequencing