Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with
or
.
Download ZIP
Browse files

major (simple) restructuring to remove wrapper directory, for bioc gi…

…t-svn compat
  • Loading branch information...
commit bbfe398a4ba2d6d40fdb255299c33ae742350f57 1 parent 2fd9e25
@vsbuffalo authored
Showing with 3 additions and 32 deletions.
  1. +3 −1 .gitignore
  2. 0  {qrqc → }/ChangeLog
  3. 0  {qrqc → }/DESCRIPTION
  4. +0 −31 Makefile
  5. 0  {qrqc → }/NAMESPACE
  6. 0  {qrqc → }/NEWS
  7. 0  {qrqc → }/R/AllClasses.R
  8. 0  {qrqc → }/R/AllGenerics.R
  9. 0  {qrqc → }/R/ggplotting-methods.R
  10. 0  {qrqc → }/R/main.R
  11. 0  {qrqc → }/R/plotting-methods.R
  12. 0  {qrqc → }/R/report-methods.R
  13. 0  {qrqc → }/R/show-methods.R
  14. 0  {qrqc → }/R/utils.R
  15. 0  {qrqc → }/inst/NEWS
  16. 0  {qrqc → }/inst/doc/qrqc.Rnw
  17. 0  {qrqc → }/inst/extdata/fasta-report-template.html
  18. 0  {qrqc → }/inst/extdata/fastq-report-template.html
  19. 0  {qrqc → }/inst/extdata/iupac.fastq
  20. 0  {qrqc → }/inst/extdata/random.fasta
  21. 0  {qrqc → }/inst/extdata/test-contam.fastq
  22. 0  {qrqc → }/inst/extdata/test-trimmed.fastq
  23. 0  {qrqc → }/inst/extdata/test.fasta
  24. 0  {qrqc → }/inst/extdata/test.fastq
  25. 0  {qrqc → }/man/FASTASummary-class.Rd
  26. 0  {qrqc → }/man/FASTQSummary-class.Rd
  27. 0  {qrqc → }/man/SequenceSummary-class.Rd
  28. 0  {qrqc → }/man/basePlot-methods.Rd
  29. 0  {qrqc → }/man/calcKL.Rd
  30. 0  {qrqc → }/man/gcPlot-methods.Rd
  31. 0  {qrqc → }/man/geom_qlinerange.Rd
  32. 0  {qrqc → }/man/getBase-methods.Rd
  33. 0  {qrqc → }/man/getBaseProp-methods.Rd
  34. 0  {qrqc → }/man/getGC-methods.Rd
  35. 0  {qrqc → }/man/getKmer-methods.Rd
  36. 0  {qrqc → }/man/getMCQual-methods.Rd
  37. 0  {qrqc → }/man/getQual-methods.Rd
  38. 0  {qrqc → }/man/getSeqlen-methods.Rd
  39. 0  {qrqc → }/man/kmerEntropyPlot.Rd
  40. 0  {qrqc → }/man/kmerKLPlot.Rd
  41. 0  {qrqc → }/man/list2df.Rd
  42. 0  {qrqc → }/man/makeReport.Rd
  43. 0  {qrqc → }/man/plotBases.Rd
  44. 0  {qrqc → }/man/plotGC.Rd
  45. 0  {qrqc → }/man/plotQuals.Rd
  46. 0  {qrqc → }/man/plotSeqLengths.Rd
  47. 0  {qrqc → }/man/qualPlot-methods.Rd
  48. 0  {qrqc → }/man/readSeqFile.Rd
  49. 0  {qrqc → }/man/scale_color_dna.Rd
  50. 0  {qrqc → }/man/scale_color_iupac.Rd
  51. 0  {qrqc → }/man/seqlenPlot-methods.Rd
  52. 0  {qrqc → }/src/Makevars
  53. 0  {qrqc → }/src/Makevars.win
  54. 0  {qrqc → }/src/R_init_io.c
  55. 0  {qrqc → }/src/io.c
  56. 0  {qrqc → }/src/io.h
  57. 0  {qrqc → }/tests/test-functions.R
View
4 .gitignore
@@ -20,4 +20,6 @@ tramp
*.pdf
# Thumbnails
._*
-auto/
+auto/
+src-i386
+src-x86_64
View
0  qrqc/ChangeLog → ChangeLog
File renamed without changes
View
0  qrqc/DESCRIPTION → DESCRIPTION
File renamed without changes
View
31 Makefile
@@ -1,31 +0,0 @@
-# R package Makefile template
-# Vince Buffalo <vsbuffaloAAAAA@gmail.com> (with poly-A tail removed)
-#
-
-DIR=qrqc
-PKG=$(DIR)_*.tar.gz
-
-build: clean check
- R CMD BUILD $(DIR)
-
-check: clean
- R CMD CHECK $(DIR)
-
-install:
- R CMD INSTALL $(PKG)
-
-all: build install
-
-clean: clean-pdf
- rm -f qrqc_*.tar.gz
- rm -rf qrqc/inst/doc/auto
- rm -f qrqc/src/*.o qrqc/src/*.so
- rm -rf .DS_Store
- find . | grep .DS_Store | xargs rm
- rm -rf qrqc.Rcheck
-
-clean-pdf:
- rm -f $(DIR).pdf
-
-pdf: clean-pdf
- R CMD Rd2pdf $(DIR)
View
0  qrqc/NAMESPACE → NAMESPACE
File renamed without changes
View
0  qrqc/NEWS → NEWS
File renamed without changes
View
0  qrqc/R/AllClasses.R → R/AllClasses.R
File renamed without changes
View
0  qrqc/R/AllGenerics.R → R/AllGenerics.R
File renamed without changes
View
0  qrqc/R/ggplotting-methods.R → R/ggplotting-methods.R
File renamed without changes
View
0  qrqc/R/main.R → R/main.R
File renamed without changes
View
0  qrqc/R/plotting-methods.R → R/plotting-methods.R
File renamed without changes
View
0  qrqc/R/report-methods.R → R/report-methods.R
File renamed without changes
View
0  qrqc/R/show-methods.R → R/show-methods.R
File renamed without changes
View
0  qrqc/R/utils.R → R/utils.R
File renamed without changes
View
0  qrqc/inst/NEWS → inst/NEWS
File renamed without changes
View
0  qrqc/inst/doc/qrqc.Rnw → inst/doc/qrqc.Rnw
File renamed without changes
View
0  qrqc/inst/extdata/fasta-report-template.html → inst/extdata/fasta-report-template.html
File renamed without changes
View
0  qrqc/inst/extdata/fastq-report-template.html → inst/extdata/fastq-report-template.html
File renamed without changes
View
0  qrqc/inst/extdata/iupac.fastq → inst/extdata/iupac.fastq
File renamed without changes
View
0  qrqc/inst/extdata/random.fasta → inst/extdata/random.fasta
File renamed without changes
View
0  qrqc/inst/extdata/test-contam.fastq → inst/extdata/test-contam.fastq
File renamed without changes
View
0  qrqc/inst/extdata/test-trimmed.fastq → inst/extdata/test-trimmed.fastq
File renamed without changes
View
0  qrqc/inst/extdata/test.fasta → inst/extdata/test.fasta
File renamed without changes
View
0  qrqc/inst/extdata/test.fastq → inst/extdata/test.fastq
File renamed without changes
View
0  qrqc/man/FASTASummary-class.Rd → man/FASTASummary-class.Rd
File renamed without changes
View
0  qrqc/man/FASTQSummary-class.Rd → man/FASTQSummary-class.Rd
File renamed without changes
View
0  qrqc/man/SequenceSummary-class.Rd → man/SequenceSummary-class.Rd
File renamed without changes
View
0  qrqc/man/basePlot-methods.Rd → man/basePlot-methods.Rd
File renamed without changes
View
0  qrqc/man/calcKL.Rd → man/calcKL.Rd
File renamed without changes
View
0  qrqc/man/gcPlot-methods.Rd → man/gcPlot-methods.Rd
File renamed without changes
View
0  qrqc/man/geom_qlinerange.Rd → man/geom_qlinerange.Rd
File renamed without changes
View
0  qrqc/man/getBase-methods.Rd → man/getBase-methods.Rd
File renamed without changes
View
0  qrqc/man/getBaseProp-methods.Rd → man/getBaseProp-methods.Rd
File renamed without changes
View
0  qrqc/man/getGC-methods.Rd → man/getGC-methods.Rd
File renamed without changes
View
0  qrqc/man/getKmer-methods.Rd → man/getKmer-methods.Rd
File renamed without changes
View
0  qrqc/man/getMCQual-methods.Rd → man/getMCQual-methods.Rd
File renamed without changes
View
0  qrqc/man/getQual-methods.Rd → man/getQual-methods.Rd
File renamed without changes
View
0  qrqc/man/getSeqlen-methods.Rd → man/getSeqlen-methods.Rd
File renamed without changes
View
0  qrqc/man/kmerEntropyPlot.Rd → man/kmerEntropyPlot.Rd
File renamed without changes
View
0  qrqc/man/kmerKLPlot.Rd → man/kmerKLPlot.Rd
File renamed without changes
View
0  qrqc/man/list2df.Rd → man/list2df.Rd
File renamed without changes
View
0  qrqc/man/makeReport.Rd → man/makeReport.Rd
File renamed without changes
View
0  qrqc/man/plotBases.Rd → man/plotBases.Rd
File renamed without changes
View
0  qrqc/man/plotGC.Rd → man/plotGC.Rd
File renamed without changes
View
0  qrqc/man/plotQuals.Rd → man/plotQuals.Rd
File renamed without changes
View
0  qrqc/man/plotSeqLengths.Rd → man/plotSeqLengths.Rd
File renamed without changes
View
0  qrqc/man/qualPlot-methods.Rd → man/qualPlot-methods.Rd
File renamed without changes
View
0  qrqc/man/readSeqFile.Rd → man/readSeqFile.Rd
File renamed without changes
View
0  qrqc/man/scale_color_dna.Rd → man/scale_color_dna.Rd
File renamed without changes
View
0  qrqc/man/scale_color_iupac.Rd → man/scale_color_iupac.Rd
File renamed without changes
View
0  qrqc/man/seqlenPlot-methods.Rd → man/seqlenPlot-methods.Rd
File renamed without changes
View
0  qrqc/src/Makevars → src/Makevars
File renamed without changes
View
0  qrqc/src/Makevars.win → src/Makevars.win
File renamed without changes
View
0  qrqc/src/R_init_io.c → src/R_init_io.c
File renamed without changes
View
0  qrqc/src/io.c → src/io.c
File renamed without changes
View
0  qrqc/src/io.h → src/io.h
File renamed without changes
View
0  qrqc/tests/test-functions.R → tests/test-functions.R
File renamed without changes
Please sign in to comment.
Something went wrong with that request. Please try again.