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Commits on Oct 17, 2014

  1. fixed error in readme, thanks to @kbradnam

    committed Oct 17, 2014
    20d3cff
Commits on Apr 19, 2014

  1. version bump; removed paper, this will go into separate repository

    committed Apr 19, 2014
    c128b19

  2. Merge pull request #19 from kdmurray91/fix-fclose 

    Call fclose on output_fp when -o option is given
    committed Apr 19, 2014
    2aad12e

  3. Merge pull request #18 from kdmurray91/optimised 

    Further optimisations
    committed Apr 19, 2014
    8ffdb67
Commits on Apr 14, 2014
  1. @kdmurray91

    update tests w/ optimised score_sequence API

    kdmurray91 committed Apr 14, 2014
    7c49783
  2. @kdmurray91

    [scythe.c] fix to fclose output_fp w/ -o option

    kdmurray91 committed Apr 14, 2014
    369cd64
  3. @kdmurray91

    further optimisations which reduce num of allocs 

    Basically trying to remove the number of calls to alloc by preserving
the score array for the duration of the call to find_best_match
    kdmurray91 committed Apr 14, 2014
    6d92a57

  4. update copyright

    committed Apr 14, 2014
    8bfe3c6

  5. version bump

    committed Apr 14, 2014
    d3712b9
  6. @kdmurray91

    small optimisations to match functions & sum 

    Mangaged to decrease runtime to ~75% of what it was with some simple
optimisations. md5sums of output appear the same
    kdmurray91 committed Apr 14, 2014
    6c6e6a6
Commits on Apr 5, 2014

  1. Merge pull request #16 from rjacobsen/master 

    Typo fix in libscythe.so target, LDFLAGS order fix in all targets.
    committed Apr 5, 2014
    9b40df7
Commits on Apr 4, 2014

  1. Typo fix in libscythe.so target, LDFLAGS order fix in all targets.

    Richard Feltstykket committed Apr 4, 2014
    d773d96
Commits on Feb 8, 2014

  1. fixed readme, changing makefile readme to all

    committed Feb 8, 2014
    9b28040
Commits on Dec 16, 2013

  1. Merge pull request #13 from jarondl/fix_matches_report 

    Fix the adapter in the matches report.
    committed Dec 16, 2013
    9b965ee
Commits on Nov 27, 2013

  1. Fix the adapter in the matches report. 

    Saved the current adapter index in best_adapter
    Yaron de Leeuw committed Nov 27, 2013
    eedd2e3
Commits on Sep 30, 2013

  1. jnfass's additions, without truncated cases

    committed Sep 30, 2013
    dd8f8d8

  2. new adapter proposal

    committed Sep 30, 2013
    6a51b6d

  3. new minimal (non-redundant set of adapter)

    committed Sep 30, 2013
    c5548d1

  4. added two other adapters

    committed Sep 30, 2013
    b459381

  5. fixed compiler warnings from Linux gcc 4.7.3

    Vince Buffalo committed Sep 30, 2013
    2b84e28
Commits on Jul 22, 2013

  1. added option for stdin processing

    committed Jul 22, 2013
    fb31147
Commits on Jun 13, 2013

  1. modified makefile so that it can find zlib

    committed Jun 13, 2013
    0410cc0
Commits on May 11, 2013

  1. added makefile targets for libscythe.so; cleaned up other parts of Ma… 

    …kefile
    committed May 11, 2013
    dd95ac4
Commits on Apr 14, 2013

  1. added note about min_keep in readme, fixed makefile

    committed Apr 14, 2013
    cb0695a

  2. fixed min_keep parameter

    committed Apr 14, 2013
    c94f130

  3. fixed opt flag

    committed Apr 14, 2013
    ffc7767

  4. fixed issue with shift

    committed Apr 14, 2013
    6e1ba55

  5. replace empty lines with Ns

    committed Apr 14, 2013
    ffd6902
Commits on Mar 28, 2013

  1. increased default prior; tests show this is a better choice

    committed Mar 28, 2013
    9f3b86a
Commits on Mar 27, 2013

  1. fixed typo in readme (thanks JRI), updated with new matching algo fro… 

    …m merge in previous commit; version bump
    committed Mar 27, 2013
    29ac0e5

  2. merge of experimental branch that does full seq matching

    committed Mar 27, 2013
    7f49366
Commits on Dec 21, 2012

  1. fixed double free issue

    committed Dec 21, 2012
    18fa6c1
Commits on Dec 20, 2012

  1. fixed another memory leak

    committed Dec 20, 2012
    5657dfc

  2. more mem leak fixing

    committed Dec 20, 2012
    6ccdeb1

  3. commented out adapter occurence array; fixed mem leak

    committed Dec 20, 2012
    45b91d3