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dna-rl

Introduction

This is an opensource project by hipo.ai.

The goal of this project is to understand systems biology from a bottom-up view. The project aims to answer to question, given the right environment, can we design biological agents with intelligence* that can perform a biological task.

First task

The first task we are targetting is DNA Transcription.

DNA Transcription is a process by which the information in a strand of DNA is copied into a new molecule of messenger RNA (mRNA). In this project, we have developed a simple environment to simulate a single-strand of DNA where the RNA-Polymerase-II(the Reinforcement learning agent) will attempt to "learn" DNA Transcription.

Goals

  • Check if the agent can learn DNA Transcription as a process without any curriculum
  • Check the boundary conditions
  • Given the right environment, can the agent also learn the role of epigenetics on DNA

Try it

Colab file (Agent, code to run) : https://colab.research.google.com/drive/1rgC1albEw1xsz8d3XE0XdS7VyHcO7EXE?usp=sharing

License

Apacha 2.0

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