Source code for Generating Medical Subject Heading Over-Representation Profiles
Python Shell Perl R
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direct_gd_predict
gene_parse
mesh_parse
profile_gd_predict
pubmed_parse
sh
sql
txt
util
ChangeLog
LICENSE
Makefile
README.top
config.default.mk
startMake.sh

README.top

Quick Start

1. Unpack source files into directory (or clone the git repository)
2. Copy ./config.default.mk to ./config.mk
3. Edit ./config.mk to point to pubmed and Entrez files
4. Make a subdirectory ./tmp/ if it does not exist

Top level README file

List of directory contents
(WIP)

mesh_parse/	parse the NIH Medical Subject Heading XML files