resolved build error with convert addition

README.md

@@ -17,6 +17,7 @@ Table of contents
     * [Tile](#tile)
     * [Relabel](#relabel)
     * [Mol](#mol)
+    * [Convert](#convert)
   * [Example Recipes](#examples-recipes)
   * [Attributions](#attributions)
 
@@ -91,6 +92,17 @@ The output BED format is chr, start, end, MI, BX, read_count
 bxtools mol $bam > mol_footprint.bed
 ```
 
+#### Convert
+Switch the alignment chromosome with the BX tag. This is a hack to allow a 10X BAM to be sorted and indexed by BX tag, rather than coordinate. 
+Useful for rapid lookup of all BX reads from a particular BX. Note that this switches "-" for "_" to make query possible with ``samtools view``.
+This also requires a two-pass solution. The first loop is to get all of the unique BX tags to build the new BAM header. The second makes the switches.
+This means that streaming from ``stdin`` is not available.
+``
+bxtools convert $bam | samtools sort - -o bx_sorted.bam
+samtools index bx_sorted.bam
+samtools view AGTCCAAGTCGGAAGT_1
+``
+
 Example recipes
 ---------------
 #### Get BX level coverage in 2kb bins across genome, ignore low-frequency tags

config.h

@@ -46,6 +46,9 @@
 /* Define to the one symbol short name of this package. */
 #define PACKAGE_TARNAME "bxtools"
 
+/* Define to the home page for this package. */
+#define PACKAGE_URL ""
+
 /* Define to the version of this package. */
 #define PACKAGE_VERSION "0.0"