@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

Pinned repositories

  1. MultiAssayExperiment

    Bioconductor package for management of multi-assay data

    R 35 27

  2. curatedMetagenomicData

    Curated and processed metagenomic data through ExperimentHub

    Shell 30 6

  3. curatedTCGAData

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 17 3

  4. HMP16SData

    16S rRNA Sequencing Data from the Human Microbiome Project

    R 2 1

  5. curatedOvarianData

    The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer

    R 4

  6. Statistical-Rethinking

    An interactive online reading of McElreath's Statistical Rethinking

    Rebol 35 10

  • MultiAssayExperimentData

    Datasets using the MultiAssayExperiment data class.

    R 2 1 GPL-2.0 Updated Jul 20, 2018

  • TCGAutils

    Toolbox package for organizing and working with TCGA data

    utilities tcga bioconductor-package
    R 1 5 Updated Jul 19, 2018

  • waldronlab.github.io

    HTML 1 MIT Updated Jul 19, 2018

  • config

    A repository for common configuration scripts

    Vim script Updated Jul 18, 2018

  • MicrobiomeWorkshop

    A workshop on microbiome analysis using Bioconductor

    HTML 7 4 CC-BY-SA-4.0 Updated Jul 17, 2018

  • curatedMetagenomicData

    Curated and processed metagenomic data through ExperimentHub

    bioconductor bioconductor-package
    Shell 30 6 Artistic-2.0 3 issues need help Updated Jul 13, 2018

  • curatedMetagenomicDataCuration

    Curation for curatedMetagenomicData

    Python 3 4 2 issues need help Updated Jul 11, 2018

  • curatedTCGAData

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    bioconductor-package
    R 17 3 Updated Jul 9, 2018

  • HGNChelper

    Identify and correct invalid gene symbols

    R Updated Jul 5, 2018

  • MultiAssayExperiment

    Bioconductor package for management of multi-assay data

    r genomics tcga bioconductor nci-itcr bioconductor-package
    R 35 27 Updated Jul 2, 2018

  • BiocNYC

    Materials presented at the BiocNYC meet-up

    HTML 2 2 Updated Jun 25, 2018

  • presentations

    A repository for public presentations

    TeX 1 4 CC0-1.0 Updated Jun 11, 2018

  • Statistical-Rethinking

    An interactive online reading of McElreath's Statistical Rethinking

    statistics course bayesian
    Rebol 35 10 Updated Jun 10, 2018

  • AppStatBio

    Applied Statistics for High-Throughput Biology

    Jupyter Notebook 3 10 MIT Updated Jun 6, 2018

  • curatedMetagenomicDataHighLoad

    Shell 2 Updated Jun 1, 2018

  • curatedMetagenomicDataWorkflow

    Updated May 27, 2018

  • curatedMetagenomicDataPipeline

    R Artistic-2.0 Updated May 21, 2018

  • HMP16SData

    16S rRNA Sequencing Data from the Human Microbiome Project

    bioconductor experimenthub hmp bioconductor-package
    R 2 1 Artistic-2.0 Updated May 21, 2018

  • GSEABenchmarkeR

    Reproducible GSEA Benchmarking

    bioconductor-package
    R 1 Artistic-2.0 Updated May 4, 2018

  • MultiAssayExperiment-TCGA

    pipeline tcga bioconductor experimenthub
    R 5 4 Updated Apr 19, 2018

  • ImageSC

    R 1 2 Updated Mar 30, 2018

  • BrownCOBRE2018

    Forked from vjcitn/BrownCOBRE2018

    teaching materials for short course

    Jupyter Notebook 2 Updated Feb 17, 2018

  • taxonomyHarvest

    Complete scraping of NCBI Taxonomy in R

    R MIT Updated Jan 30, 2018

  • MultiAssayExperiment-CCLE

    R 3 Updated Jan 5, 2018

  • The-Art-of-Data-Science

    An interactive online reading of Matsui and Peng's The Art of Data Science

    13 8 Updated Dec 14, 2017

  • MultiAssayShiny

    A shiny tool for exploring MultiAssayExperiment methods

    R 1 MIT Updated Dec 8, 2017

  • MultiAssayExperimentWorkshop

    A workshop on multi-omics data representation and analysis with MultiAssayExperiment

    R 1 1 CC-BY-SA-4.0 Updated Nov 16, 2017

  • curatedOvarianData

    The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer

    bioconductor-package
    R 4 Updated Sep 5, 2017

  • enrichOmics

    Functional enrichment analysis of high-throughput omics data

    4 4 Artistic-2.0 Updated Jul 29, 2017

  • Book_Club

    Forked from jsrodriguezl/Book_Club

    Programs and presentations for our statistical methods book club.

    R 11 Updated Jun 20, 2017
    • 0

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