SHEDS Brook Trout Occupancy Model
Adapted from: Conte-Ecology/Northeast_Bkt_Occupancy.
Most of the scripts in this repo rely on configuration variables set within the
config.sh file. Because some of these variables contain sensitive information (e.g. database passwords), the
config.sh file is not tracked in git.
The configuration includes database connection parameters, and the local path to the model data directory.
A template (
config.template.sh) is provided, with which a new
config.sh can be set up.
cp config.template.sh config.sh nano config.sh
The current (or active) model version is set within the
version.sh script, which is tracked by git and should be consistent with the repo tags.
version.sh script sets the environmental variable
SHEDS_BTO_VERSION to the minor version only, and does not include the patch number. In other words, it is only of the form
X.Y (see Model Versioning above) and does not include a