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Split-read aligner
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README

== SCISSORS ==

Overview:

SCISSORS is a split-read aligner that maps orphaned read mates (i.e. where one 
end-mate is aligned with high mapping quality, but the other mate is unmapped), 
as well as re-maps severely clipped reads (reads mapped with many unaligned or 
“clipped-off” bases).

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Compilation:
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SCISSORS requires g++ and the standard C and C++ development libraries.

Enter the src directory, and type "make".

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API Example:
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Enter the src directory, and type "make api".
Enter the src/api directory, and type "make".

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Building Google C++ Testing:
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Just enter the src directory, and type "make test".


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Authors:
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Wan-Ping Lee <wanping.lee@bc.edu> and
Jiantao Wu <jiantao.wu@bc.edu>
Marth Lab. [1], Boston College


License: MIT
Date: 2013-03-15

References:
[1] http://bioinformatics.bc.edu/marthlab/Main_Page
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