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update from trunk

git-svn-id: https://svn.r-project.org/R/branches/R-conn@11631 00db46b3-68df-0310-9c12-caf00c1e9a41
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1 parent 67edf13 commit 59cabbd36af6158358d79d1444a4b1a26fde706b ripley committed Dec 1, 2000
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@@ -9,7 +9,7 @@ source, currently consisting of
Douglas Bates <bates@stat.wisc.edu>
John Chambers <jmc@research.bell-labs.com>
Peter Dalgaard <p.dalgaard@kubism.ku.dk>
-Robert Gentleman <rgentlem@stat.auckland.ac.nz>
+Robert Gentleman <rgentlem@jimmy.dfci.harvard.edu>
Kurt Hornik <Kurt.Hornik@ci.tuwien.ac.at>
Ross Ihaka <ihaka@stat.auckland.ac.nz>
Friedrich Leisch <Friedrich.Leisch@ci.tuwien.ac.at>
@@ -21,4 +21,4 @@ Brian Ripley <ripley@stats.ox.ac.uk>
Duncan Temple Lang <duncan@research.bell-labs.com>
Luke Tierney <luke@stat.umn.edu>
-plus Heiner Schwarte up to October 1999.
+plus Heiner Schwarte <h.schwarte@bluewin.ch> up to October 1999.
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87 BUGS
@@ -25,11 +25,6 @@ actual reference number, of course!).
Directory: Accuracy
-* PR# 699 *
-Subject: bug in pnorm
-From: ratjamm@alum.mit.edu
-Date: Fri, 20 Oct 2000 21:46:18 +0200 (MET DST)
---accuracy issues in pnorm
* PR# 631 *
Subject: svd error
From: =?iso-8859-1?Q?J=F6rg?= Polzehl <polzehl@wias-berlin.de>
@@ -50,20 +45,16 @@ Subject: Probable bug in RODBC 0.7.x
From: emmanuel.charpentier@sap.ap-hop-paris.fr
Date: Mon, 23 Oct 2000 13:15:55 +0200 (MET DST)
--Package maintainer is aware of this
-* PR# 503 *
-Subject: dmvnorm() bug in e1071
-From: "Gregory R. Warnes" <warnes@biostat.washington.edu>
-Date: Fri, 24 Mar 2000 03:24:45 +0000 (GMT)
-* PR# 496 *
-From: bonneau@epi.roazhon.inra.fr (en148)
-Date: Tue, 21 Mar 2000 10:57:13 +0100 (MET)
---base R has no est.variogram function.
---This appears to be a bug report on sgeostat.
* PR# 567 *
Subject: ctest not works
From: George Diniz <george@cpqam.fiocruz.br>
Date: Sun, 12 Mar 2000 12:03:45 -0200
--possibly the RH6.2 Fortran bug
+* PR# 496 *
+From: bonneau@epi.roazhon.inra.fr (en148)
+Date: Tue, 21 Mar 2000 10:57:13 +0100 (MET)
+--base R has no est.variogram function.
+--This appears to be a bug report on sgeostat.
Directory: Analyses
@@ -80,15 +71,10 @@ none
Directory: Graphics
-* PR# 726 *
-Subject: par(las=.) gives wrong "adj" for mtext()
+* PR# 750 *
+Subject: abline() does not obey "xpd" (clipping rules)
From: Martin Maechler <maechler@stat.math.ethz.ch>
-Date: Tue, 7 Nov 2000 13:03:58 +0100
-* PR# 693 *
-Subject: Bug report
-From: "Amaratunga, Rohith" <Rohith.Amaratunga@dsto.defence.gov.au>
-Date: Thu, 12 Oct 2000 14:08:31 +1100
---grid problem: note a report on 0.90.1 and nothing to reproduce this
+Date: Mon, 27 Nov 2000 18:27:11 +0100
* PR# 660 *
Subject: identify.default ignores any setting of cex.
From: Prof Brian Ripley <ripley@stats.ox.ac.uk>
@@ -100,6 +86,15 @@ Date: Wed, 2 Jun 1999 15:02:03 +0200 (MET DST)
--The persp algorithm does not apply the occlusion rules to the frame,
--which is always plotted first.
--A bug, but not very simple to fix.
+* PR# 726 *
+Subject: par(las=.) gives wrong "adj" for mtext()
+From: Martin Maechler <maechler@stat.math.ethz.ch>
+Date: Tue, 7 Nov 2000 13:03:58 +0100
+* PR# 693 *
+Subject: Bug report
+From: "Amaratunga, Rohith" <Rohith.Amaratunga@dsto.defence.gov.au>
+Date: Thu, 12 Oct 2000 14:08:31 +1100
+--grid problem: note a report on 0.90.1 and nothing to reproduce this
Directory: In-Out
@@ -112,6 +107,10 @@ Date: Thu, 31 Aug 2000 07:28:02 +0200 (MET DST)
Directory: Installation
+* PR# 733 *
+Subject: gnome-support problems
+From: olav@melvin.jordforsk.no
+Date: Fri, 10 Nov 2000 10:55:31 +0100 (MET)
* PR# 697 *
Subject: build errors in configure script
From: flip@skidmore.edu
@@ -279,11 +278,47 @@ none
Directory: incoming
+* PR# 754 *
+Subject: means in arima0
+From: arto.luoma@uta.fi
+Date: Thu, 30 Nov 2000 14:02:55 +0100 (MET)
* PR# 734 *
Subject: Assigning into a dataframe
From: J.C.Rougier@durham.ac.uk
Date: Fri, 10 Nov 2000 16:00:31 GMT
-* PR# 733 *
-Subject: gnome-support problems
-From: olav@melvin.jordforsk.no
-Date: Fri, 10 Nov 2000 10:55:31 +0100 (MET)
+* PR# 743 *
+Subject: Re: [Rd] How do you construct a function from a list?
+From: dmurdoch@pair.com (Duncan Murdoch)
+Date: Wed, 22 Nov 2000 12:57:19 GMT
+* PR# 741 *
+Subject: match() is not correct for "close numerics"
+From: Martin Maechler <maechler@stat.math.ethz.ch>
+Date: Tue, 21 Nov 2000 16:15:23 +0100
+* PR# 748 *
+Subject: Problem with NAs using chisq.test()
+From: kjetikj@astro.uio.no
+Date: Sun, 26 Nov 2000 21:21:22 +0100 (MET)
+* PR# 747 *
+Subject: Bug in args with no defaults
+From: dmurdoch@pair.com (Duncan Murdoch)
+Date: Sun, 26 Nov 2000 20:14:30 GMT
+* PR# 746 *
+Subject: printing of lists
+From: David Firth <david.firth@nuffield.oxford.ac.uk>
+Date: Fri, 24 Nov 2000 12:31:33 +0000
+* PR# 751 *
+Subject: BUG: polyroot()
+From: "Li Dongfeng" <mavip1@inet.polyu.edu.hk>
+Date: Tue, 28 Nov 2000 13:24:33 +0800
+* PR# 749 *
+Subject: (NA || x) and (NA && y) {another "bug" }
+From: Martin Maechler <maechler@stat.math.ethz.ch>
+Date: Mon, 27 Nov 2000 09:25:38 +0100
+* PR# 753 *
+Subject: Re: [R] Step function
+From: Thomas Lumley <thomas@biostat.washington.edu>
+Date: Wed, 29 Nov 2000 10:30:26 -0800 (PST)
+* PR# 752 *
+Subject: non-centrality parameter in pf()
+From: Jerome Asselin <jerome@stat.ubc.ca>
+Date: Tue, 28 Nov 2000 11:43:06 -0800 (PST)
View
62 FAQ
@@ -1,6 +1,6 @@
R FAQ
Frequently Asked Questions on R
-Version 1.1-25, 2000-11-14
+Version 1.1-32, 2000-11-30
Kurt Hornik
@@ -339,11 +339,11 @@ more details.
The `bin/linux' directory of a CRAN site contains Debian 2.2/2.3
packages for the i386 platform (now part of the Debian distribution and
-maintained by Doug Bates), Red Hat 6.x packages for the alpha, i386 and
-sparc platforms (maintained by Naoki Takebayashi, Martyn Plummer, and Vin
-Everett, respectively), SuSE 5.3/6.4/7.0 i386 packages by Albrecht
-Gebhardt, Mandrake 7.1 i386 packages by Michele Alzetta, and Linuxppc 5.0
-RPMs by Alex Buerkle.
+maintained by Doug Bates), Red Hat 6.x packages for the alpha and sparc
+platforms and 6.x/7.x packages for the i386 platform (maintained by Naoki
+Takebayashi, Vin Everett, and Martyn Plummer, respectively), SuSE
+5.3/6.4/7.0 i386 packages by Albrecht Gebhardt, Mandrake 7.1 i386 packages
+by Michele Alzetta, and Linuxppc 5.0 RPMs by Alex Buerkle.
The Debian packages can be accessed through APT, the Debian package
maintenance tool. Simply add the line
@@ -550,7 +550,7 @@ Tracking system.
<wwwadmin@cran.r-project.org>.
*Note:* It is very important that you indicate the copyright
- (license) information (GPL, BSD, Artistic, ...) in your submission.
+ (license) information (GPL, BSD, Artistic, ...) in your submission.
Please always use the URL of the master site when referring to CRAN.
@@ -1106,6 +1106,9 @@ works, was published in the Journal of Statistical Software
examples in "SAS System for Mixed Models" by R. C. Littell, G. A.
Milliken, W. W. Stroup and R. D. Wolfinger, 1996, SAS Institute.
+*XML*
+ Facilities for reading XML documents and DTDs.
+
*acepack*
ACE (Alternating Conditional Expectations) and AVAS (Additivity and
VAriance Stabilization for regression) methods for selecting regression
@@ -1300,6 +1303,9 @@ works, was published in the Journal of Statistical Software
*rpart*
Recursive PARTitioning and regression trees.
+*scatterplot3d*
+ Plots a three dimensional (3D) point cloud perspectively.
+
*sgeostat*
An object-oriented framework for geostatistical modeling.
@@ -1358,16 +1364,21 @@ packages still "under development" or depending on features only present in
the current development versions of R. Volunteers are invited to give
these a try, of course. This area of CRAN currently contains
+*GRASS*
+ Interface between the GRASS geographical information system and R,
+ based on starting R from within the GRASS environment and chosen
+ LOCATION and MAPSET. Wrapper and helper functions are provided for a
+ range of R functions to match the interface metadata structures.
+
*HTML*
Functions for exporting R objects as HTML tables.
-*Java*
- An interface from R to Java to create and call Java objects and
- methods.
-
*RMySQL*
An interface between R and the MySQL database system.
+*StatDataML*
+ Read and write StatDataML
+
*cmprsk*
Estimation, testing and regression modeling of subdistribution
functions in competing risks.
@@ -1407,16 +1418,27 @@ these a try, of course. This area of CRAN currently contains
*netCDF*
Read data from netCDF files.
-*syskern*
- Functions for writing code that is OS and R/S independent.
+*npConfRatio*
+ Nonparametric confidence intervals for the ratios of medians.
-*tframe*
- Functions for writing code that is independent of the representation of
- time.
+*regexp*
+ Simple regular expression interface.
*timeslab*
Time series routines.
+ Directory `src/contrib/Omegahat' contains yet unreleased packages from
+the Omegahat Project for Statistical Computing (http://www.omegahat.org).
+Currently, there are
+
+*Java*
+ An interface from R to Java to create and call Java objects and
+ methods.
+
+*RSPerl*
+ An interface from R to an embedded, persistent Perl interpreter,
+ allowing one to call arbitrary Perl subroutines, classes and methods.
+
Jim Lindsey <jlindsey@luc.ac.be> has written a collection of R packages
for nonlinear regression and repeated measurements, consisting of *event*
(event history procedures and models), *gnlm* (generalized nonlinear
@@ -1442,13 +1464,13 @@ named `PKG_VERSION.tar.gz', which may in fact be "bundles" containing more
than one package. Provided that `tar' and `gzip' are available on your
system, type
- $ R INSTALL /path/to/PKG_VERSION.tar.gz
+ $ R CMD INSTALL /path/to/PKG_VERSION.tar.gz
at the shell prompt to install to the default R directory tree (the
`library' subdirectory of `R_HOME'). To install to another tree (e.g.,
your private one), use
- $ R INSTALL -l LIB /path/to/PKG_VERSION.tar.gz
+ $ R CMD INSTALL -l LIB /path/to/PKG_VERSION.tar.gz
where LIB gives the path to the library tree to install to.
@@ -1525,11 +1547,11 @@ at the R prompt.
To remove the packages PKG_1, ..., PKG_N from the default library or the
library LIB, do
- $ R REMOVE PKG_1 ... PKG_N
+ $ R CMD REMOVE PKG_1 ... PKG_N
or
- $ R REMOVE -l LIB PKG_1 ... PKG_N
+ $ R CMD REMOVE -l LIB PKG_1 ... PKG_N
respectively.
View
@@ -46,6 +46,7 @@ MAIN_LDFLAGS = @MAIN_LDFLAGS@
@USE_LIBTOOL_TRUE@MAIN_LINK = $(LIBTOOL) --mode=link $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
MAKEINDEX = @MAKEINDEX@
MKINSTALLDIRS = $(top_srcdir)/tools/mkinstalldirs
+PERL = @PERL@
R_GUIS = @R_GUIS@
# fixme: tcltk needs to be optional
R_PKGS = base ctest eda lqs modreg mva nls splines stepfun ts tcltk
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