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branch update - not bugfree

git-svn-id: https://svn.r-project.org/R/trunk@6098 00db46b3-68df-0310-9c12-caf00c1e9a41
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1 parent 23bcc6c commit c7b5dc4ba3299fae240be28c7f8e0f32bbbf0881 pd committed Oct 7, 1999
Showing 353 changed files with 13,539 additions and 2,953 deletions.
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@@ -2,7 +2,7 @@
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
- 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+ 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
@@ -291,7 +291,7 @@ convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
- Copyright (C) 19yy <name of author>
+ Copyright (C) <year> <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -313,7 +313,7 @@ Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
- Gnomovision version 69, Copyright (C) 19yy name of author
+ Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
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221 FAQ

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@@ -163,6 +163,12 @@ If your FORTRAN libraries are in slightly peculiar places, you should
also look at LD_LIBRARY_PATH to make sure that all libraries are on this
path.
+You must set whatever compilation flags (if any) are needed to ensure
+that FORTRAN `integer' is equivalent to a C int pointer and FORTRAN
+`double precision' is equivalent to a C double pointer. (Beware of
+f2c and compilers whose integer type is by default equivalent to C
+long on platforms where long != int.)
+
BUILDING THE GNOME INTERFACE
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@@ -33,6 +33,7 @@ LIBS = @LIBS@
LN_S = @LN_S@
MAKEINDEX = @MAKEINDEX@
MKINSTALLDIRS = $(top_srcdir)/tools/mkinstalldirs
+R_PKGS = base eda lqs modreg mva stepfun ts
R_XTRA_CFLAGS = @R_XTRA_CFLAGS@
R_XTRA_CPPFLAGS = -I. -I../include -I$(top_srcdir)/src/include
R_XTRA_FFLAGS = @R_XTRA_FFLAGS@
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@@ -10,10 +10,11 @@ top_builddir = .
include $(top_builddir)/Makeconf
distdir = $(PACKAGE)-$(VERSION)
-DISTFILES = COPYING COPYRIGHTS INSTALL MIRROR-SITES NEWS PLATFORMS \
- PROJECTS README RESOURCES TASKS \
+INSTFILES = COPYING COPYRIGHTS FAQ MIRROR-SITES NEWS RESOURCES
+DISTFILES = $(INSTFILES) \
+ BUGS INSTALL PLATFORMS PROJECTS README VERSION Y2K \
Makeconf.in Makefile.in \
- config.site configure configure.in configure.mac configure.win \
+ aclocal.m4 config.site configure configure.in configure.mac \
date-stamp
SUBDIRS = src afm demos doc etc tests
@@ -46,7 +47,7 @@ install: all installdirs
(cd $${d} && $(MAKE) $@) || exit 1; \
done
@(cd $(srcdir); \
- for f in COPYING COPYRIGHTS MIRROR-SITES RESOURCES; do \
+ for f in $(INSTFILES); do \
$(INSTALL_DATA) $${f} $(rhome); \
done)
@echo "Installing executables ..."
@@ -87,7 +88,7 @@ install-strip:
uninstall:
@echo "Uninstalling library ..."
@(cd $(rhome)/library; \
- for p in base eda lqs modreg mva stepfun ts; do rm -rf $${p}; done)
+ for p in $(R_PKGS); do rm -rf $${p}; done)
@echo " Rebuilding help index ..."
@(cd $(rhome)/library; \
cat */TITLE > LibIndex 2> /dev/null || echo "" > LibIndex)
@@ -102,7 +103,7 @@ uninstall:
@for f in R Rd2txt Rdconv Rdindex Sd2Rd; do \
rm -f $(bindir)/$${f}; \
done
- @for f in COPYING COPYRIGHTS MIRROR-SITES RESOURCES; do \
+ @for f in $(INSTFILES); do \
rm -f $(rhome)/$${f}; \
done
@for d in afm demos doc etc; do \
@@ -162,3 +163,10 @@ TAGS:
check test:: test-All
test-All test-Examples test-Specific::
@(cd tests && $(MAKE) $@)
+check-force: test-All-force
+test-All-force:
+ @(cd tests && $(MAKE) test-All FORCE=FORCE)
+test-Examples-force:
+ @(cd tests && $(MAKE) test-Examples FORCE=FORCE)
+test-Specific-force:
+ @(cd tests && $(MAKE) test-Specific FORCE=FORCE)
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159 NEWS
@@ -5,25 +5,172 @@
**************************************************
+
+ **************************************************
+ * *
+ * 0.65 SERIES NEWS *
+ * *
+ **************************************************
+
+
+ CHANGES IN R VERSION 0.65.1
+
+
NEW FEATURES
+ o .C, .Fortran. .Call and .External now have an argument PACKAGE
+ to specify the shared library to be used for the symbol. See
+ ?Foreign. Package writers are encouraged to use this.
+
+ o On startup (unless --no-environ), first .Renviron is looked for in
+ the current directory, and then in $HOME/ (= ~/ ).
+
+ o New options(error.halt = FALSE) (default is TRUE) allows
+ continuation after an error in batch processing.
+
+ o In graphics, lty has now 6 instead of 4 predefined line types.
+
+ o as.hclust.twins() in package mva to convert (and plot)
+ objects from agnes() and daisy() of package cluster.
+
+ o R INSTALL now can directly install pkg_version.tar.gz files
+ as obtained from CRAN. New function update.packages()
+ & friends for automatically downloading packages from CRAN and
+ install them on the fly (on Unix and Windows).
+
+ o New function commandArgs() to record the command-line used.
+
+ o New arguments `local' and `now' to dyn.load.
+
+ o diag(x) now keeps names when appropriate and barfs when x is an array.
+
+ o functions source.url, url.show, read.table.url, scan.url to read
+ from an http server instead of a file.
+
+ o grid() gets useful defaults: grid lines drawn at tick marks.
+
+ o set operations union(), intersect(), setdiff() and is.element().
+
+ o New function stars() for star plots and segment diagrams of
+ multivariate data.
+
+ o Version info now in the top-level file `VERSION'.
+
+ o barplot has a "plot = TRUE" argument and now returns locations of
+ all bars even when "beside = TRUE".
+
+ o hist has an "nclass" argument purely for S compatibility.
+
o Character strings can now, with most compilers, be passed
on and from Fortran. See ?Foreign for details.
o Functions as.single and single now have the effect with
.C and .Fortran of passing a numeric argument as float/REAL
rather than as double/DOUBLE PRECISION, by setting the
- attribute "Csingle".
+ attribute "Csingle". See ?Foreign for details.
+
+ o Comparison of strings uses the current locale on systems where
+ this is available, and so is always consistent with the ordering
+ used by sort().
+
+ o sapply has a new argument USE.NAMES=TRUE and now returns a named
+ result when its input was a character.
+
+ o plot.stepfun has new arguments lty and lwd.
+
+ o x labels in boxplot now handled differently, so that math
+ expressions are allowed.
+
+ o postscript() argument `onefile' now does something, and there
+ is a new paper type `special' and new argument `pagecentre'.
+ See ?postscript for details.
+
+ o Experimental function dev2bitmap() to copy to a bitmap graphics format.
+
BUG FIXES
+ o centering in text() will be more accurate, particularly on devices
+ with full font metric information (postscript, x11, not windows).
+
+ o arguments after --no-readline in the Unix version were ignored.
+
+ o couldn't set attributes in hashed environments.
+
+ o [<-.data.frame mishandled dfr[1] <- 1 (forgotten drop=FALSE)
+
+ o sys.on.exit didn't work
+
+ o sys.parent didn't quite work either for n >= 2.
+
+ o par("mfg") was wrong, par(mfg=) switched to down columns. Now
+ par(mfrow/mfcol = c(nr, nc)) followed by par(mfg=c(i,j)) is
+ the preferred style.
+
+ o plot( <aov.object> ) failed after 2nd plot, PR#279
+
+ o Several patches for systems with long != int.
+
+ o approx failed if inputs contained NAs.
+
+ o weighted lm fits with 1 diml x failed if any weight was zero.
+
+ o lm.influence failed when there were undetermined coefficients, PR#280.
+
+ o problem with function()... inside saved functions because arg count
+ increased to accommodate stored source. (Incorrect number of
+ arguments to "lambda")
+
+ o improvements to generation of HTML help files: should work
+ better on viewers other than Netscape.
+
+ o stl in package ts could conflict with package leaps: the Fortran
+ symbols have been changed.
+
+ o help page for factor is improved and corrected.
+
+ o na.omit.ts and na.contiguous now preserve time-series attributes.
+
+ o more automatic testing ("make check") using options(error.halt=FALSE)
+ led to the elimination of dozens (!) of seg.fault possibilities.
+
+ o family quasi handles zero observations with var=mu^2 more correctly.
+
+ o dynamically-loaded libraries are searched last-loaded first, as
+ documented (under Unix it used to be first-loaded first).
+
+ o rowsum failed with a matrix and a single group (drop=FALSE needed).
+
+ o deriv(y ~ <expr>(x)) now works as well as deriv(~ <expr>(x)).
+
+ o qr over-estimated ranks in some degenerate cases.
+ qr did not work correctly if n < p and the first n cols were
+ rank-deficient.
+
+ o str() wouldn't work quite right for named characters; doesn't quote
+ symbols anymore.
+
+ o Colour conversion (rgb, gray, hsv) truncated doubles and so
+ gave machine-dependent results on the examples. It now rounds.
+
+ o cat() now admits again that it can't handle lists instead of
+ "random" segfaulting.
+
+ o More accurate rounding (including rounding to even) on platforms
+ without rint (e.g. Windows).
+
+ o qgeom() is now left-continuous with a tolerance, and so the
+ example on the help page will be platform-independent.
+
+ o pretty() has been changed to use tolerance around integers and
+ so will be more platform-independent. The exact output has
+ probably changed on all platforms for some input.
+
+ o image() & filled.contour() now work for 1x1 matrices
+ and with constant z values.
- **************************************************
- * *
- * 0.65 SERIES NEWS *
- * *
- **************************************************
+ CHANGES IN R VERSION 0.65.0
NEW FEATURES
View
3 README
@@ -34,8 +34,7 @@ source code CVS archive. The group currently consists of
Douglas Bates, Peter Dalgaard, Robert Gentleman,
Kurt Hornik, Ross Ihaka, Friedrich Leisch, Thomas Lumley,
Martin Maechler, Guido Masarotto, Paul Murrell,
- Brian Ripley, Heiner Schwarte, Duncan Temple Lang
- and Luke Tierney.
+ Brian Ripley, Duncan Temple Lang and Luke Tierney.
As noted above, discussions of the development process take
place in the r-devel mailing list.
View
@@ -69,5 +69,5 @@ the report to the right address. It also fills in some basic
information, such as your R version and operating system, which has
proved helpful in the debugging process.
-A summary of the entries at the time this distribution was prepared is
-in file BUGS in this directory.
+The source distribution has a file BUGS at the top level giving a
+summary of the entries at the time this distribution was prepared.
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@@ -0,0 +1 @@
+0.65.1 Patched (unreleased)
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