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Using various models to forecast abundances at Portal
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README.md

Portal Predictions

Build Status DOI License

Portal Forecasting Website

This is the main repository for predictions made on the Portal rodent census data Portal Project.

Predictions are made and archived weekly. Approximately once a month, one of these forecasts is made immediately prior to a new trapping session (trapping occurs as close to each new moon as possible).

How to add a new model

Modeling is driven by the portalcasting package. New models should be added there (see the see the "adding a model" vignette).

Docker builds

Forecasts are run using Travis CI based on a docker image. This makes the builds faster and more reproducible. The image is built using portalcasting v0.8.0.

Adding new packages to this repo or updating existing packages will require rebuilding of the Docker container. When building, tag the image with the latest tag, as well as a named tag for the date (yyyy-mm-dd, which you should replace with the actual current date). Use the following commands:

sudo docker build -t weecology/portal_predictions:latest -t weecology/portal_predictions:yyyy-mm-dd . 
sudo docker push weecology/portal_predictions

(Note that Windows users will not need to include the sudo command.)

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