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Wei-ju Wu weiju

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Baliga lab at the Institute for Systems Biology Code for Systems Biology
Wei-ju Wu
Wei-ju Wu
  • Wei-ju Wu cfe29bb
    made changes to work on csh according to mharris
Wei-ju Wu
Wei-ju Wu
Wei-ju Wu
  • Wei-ju Wu 85d6a74
    fix: normalize to max score did not do anything, reading string netwo…
Wei-ju Wu
  • Wei-ju Wu 2510cae
    added case sensitivity switch to thesaurus
Wei-ju Wu
  • Wei-ju Wu 22db0e5
    log prints # rows and columns at the start, save scoring means into s…
Wei-ju Wu
  • Wei-ju Wu c4cc248
    added optional reverse mapping feature to set enrichment scoring
Wei-ju Wu
  • Wei-ju Wu 1071a2d
    last iteration will keep all meme output and write it to a final resu…
  • Wei-ju Wu 1b759e4
    motifing: if force switch is turned on, meme will be run on all clusters
  • 1 more commit »
weiju edited the weiju/cmonkey-python wiki
Wei-ju Wu
Wei-ju Wu
  • Wei-ju Wu 82fed83
    moved boto starter to cmonkey package
Wei-ju Wu
Wei-ju Wu
  • Wei-ju Wu 7e66af5
    using synonyms for the importing bicluster genes
Wei-ju Wu
  • Wei-ju Wu 1e2e2b8
    random seed default is system time, new ensemble settings
Wei-ju Wu
  • Wei-ju Wu 370209d
    added workaround for buggy read.delim in R 3.1.0
Wei-ju Wu
  • Wei-ju Wu 1fc6a36
    inferelator can use web service to retrieve transcription factors
Wei-ju Wu
Wei-ju Wu
  • Wei-ju Wu ca5db9e
    added error handling: num_per_row/num_per_col too large can lead to o…
Wei-ju Wu
  • Wei-ju Wu d503fab
    ensemble: random selection of at least kmin columns and added random …
Wei-ju Wu
  • Wei-ju Wu aaf3971
    ensemble splitting changed to generate random columns in a defined range
Wei-ju Wu
  • Wei-ju Wu 7b09b92
    modified MEMESuite dependent tests to account for changed configuration
Wei-ju Wu
  • Wei-ju Wu 30779c5
    MEME: max width and background order have parameters now, config offe…
Wei-ju Wu
  • Wei-ju Wu b6d81f7
    ensemble.py is now generating a script for SGE job arrays
Wei-ju Wu
  • Wei-ju Wu 3281e58
    adde integration with network portal database
Wei-ju Wu
Wei-ju Wu
Wei-ju Wu
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