LIGER removes genes and no object created

[w2niva]

My dataset consists of four treatments and two replicates. When I try create liger object, it removes around 3000 genes from each sample and does not create an integrated object.

[jw156605]

By default, LIGER removes genes with zero expression in a given dataset. You can disable this behavior by using remove.missing=F when you call createLiger.