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- Added support for phosphorylation neutral loss;
- In single PSM module, added support for user-defined modification;
- In single PSM module, added support for multiple modifications on the same site;
- Improved the quality of figure in PNG/TIFF format;
- Improved the performance of figure export panel.
- Improved command line option description;
- Fixed the bug of loading pepXML from comet search engine;
- Improved modification compatibility.