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The ENCODE DCC ATAC-seq pipeline, adapted for Krews
Service for signal and peak data
Typescript library for reading BigWig and BigBed files.
React App with components for rendering protein, DNA, and RNA sequence logos
Algorithm to detect germline and de novo transposon insertions
Altered TCR Ligand Affinities and Structures
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
KREWS Scientific Data Pipeline Framework
LD Score Regression (LDSC)
ZDOCK predictions and PDB structures in C++
extract genomic regions from segmentation using regular expression
A set of scripts for looking piRNA guide-target pairs by integrating small RNA-seq and degradome-seq data
Reader / Writer for UCSC 2-bit Genome Format
A script that can get ucsc screenshots automatically.
UCSC Genome Browser source tree. Stable branch: "beta".
Jointly characterizing epigenetic dynamics across multiple human cell types
Scripts in "Differential Analysis of Chromatin Accessibility and Histone Modifications for Predicting Mouse Developmental Enhancers, Fu et al."